Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04885 832 / 0 Glycosyl hydrolase family protein (.1) AT5G20950 827 / 0 Glycosyl hydrolase family protein (.1.2) AT5G20940 779 / 0 Glycosyl hydrolase family protein (.1) AT3G47000 707 / 0 Glycosyl hydrolase family protein (.1) AT3G62710 689 / 0 Glycosyl hydrolase family protein (.1) AT3G47010 686 / 0 Glycosyl hydrolase family protein (.1.2) AT3G47040 675 / 0 Glycosyl hydrolase family protein (.1.2) AT3G47050 672 / 0 Glycosyl hydrolase family protein (.1.2) AT3G19620 146 / 1e-36 Glycosyl hydrolase family protein (.1) AT5G49360 145 / 4e-36 ATBXL1, BXL1 beta-xylosidase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013646 [exp] 949 / 0 AT5G20950 941 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10010657 [exp] 925 / 0 AT5G20950 889 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10010656 [exp] 876 / 0 AT5G20950 897 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10001151 [exp] 843 / 0 AT5G20950 911 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10013390 [exp] 820 / 0 AT5G20950 935 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10033393 [exp] 815 / 0 AT5G04885 964 / 0.0 Glycosyl hydrolase family protein (.1) Lus10008432 [exp] 805 / 0 AT5G20950 927 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10023604 [exp] 803 / 0 AT5G20950 822 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10043457 [exp] 795 / 0 AT5G20950 809 / 0.0 Glycosyl hydrolase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G037400 [exp] 917 / 0 AT5G20950 926 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.013G055600 [exp] 909 / 0 AT5G20950 932 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.008G013500 [exp] 874 / 0 AT5G04885 966 / 0.0 Glycosyl hydrolase family protein (.1) Potri.009G153900 [exp] 860 / 0 AT5G20950 937 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.008G013700 [exp] 855 / 0 AT5G20950 901 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.009G042800 [exp] 707 / 0 AT3G47000 934 / 0.0 Glycosyl hydrolase family protein (.1) Potri.005G059200 [exp] 392 / 1e-133 AT5G04885 385 / 8e-131 Glycosyl hydrolase family protein (.1) Potri.009G154032 [exp] 278 / 4e-90 AT5G20940 254 / 7e-82 Glycosyl hydrolase family protein (.1) Potri.009G154802 [exp] 263 / 1e-83 AT5G04885 232 / 5e-72 Glycosyl hydrolase family protein (.1) Potri.009G154701 [exp] 233 / 6e-73 AT5G04885 286 / 6e-94 Glycosyl hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00933 [flax] [poplar] Glyco_hydro_3 Glycosyl hydrolase family 3 N terminal domain CL0058 [flax] [poplar] PF01915 [flax] [poplar] Glyco_hydro_3_C Glycosyl hydrolase family 3 C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10005706 pacid=23168871 polypeptide=Lus10005706 locus=Lus10005706.g ID=Lus10005706.BGIv1.0 annot-version=v1.0 ATGGGAATCCGACCACGATTCGGATTCGGTTGGAAGAATCATAACCTCATAATGGTGCTGTTGGGATCCACCATTGCTCTGCTTTTGGCAGATGCGGAAG AGTACATGGTTTACAAAGACCCCAACCAACCCGTAGAAGCTCGGGTCCGCGACTTGCTTGGCAGGATGACACTGCCCGAAAAGATCGGCCAGATGGTTCA GATCGATCGGTCGGTCGCCTCGGCCGATGTCATGAAGAACTACTTCATAGGGAGTGTGTTGAGTGGAGGAGGAAGCGTACCGGAGAAAGGAGCTTCGCCG GAGACGTGGATTAAGATGGTGGACTGGTTCCAGAGCGGCGCTCTATCGACAAGGCTCGGTATCCCGATGATTTATGGGATTGATGCCGTTCATGGCCACA ACAATGCTTACAATGCCACCATTTTCCCCCACAATGTTGGTCTTGGAGCTACTAGGGACCCCGAGTTGGTGAAAAGGATAGGAGCTGCAACCGCACTCGA AATCCGGGCTACAGGGATTCATTATACTTTTGCACCCTGTGTCGCGGTATGTAGAGATCCGAGATGGGGAAGGTGCTACGAGAGCTACAGTGAGGATCCC GAGGTCGTCAAAGCAATGACTGAGCTCGTCACCGGACTGCAAGGCGATCTCCCTCCTGATCACTCACTGGAGGGATTCCCTTATGTTGCAGGAAAGAGGA ACGTGGCGGCTTGTGCTAAGCACTACGTGGGCGACGGTGGGACCGTAAACGGGATCAACGGAAACAACACCGTTTCCGACTGGAAGAACATAGAAGAGAT CCAAATGGCCGGATATCGGTCGTCCATAACCAAAGGGGTTTCCTCAATCATGGCTTCTTACTCGAGCTTGAACGGAGTTAAGATGCATGCTAATCGTGAC ATGATCGCCGGCTTCCTCAAGAACACTCTTAATTTCACGGGTTTTGTGATCTCAGATTGGAAAGGAATTGACTTGATCACCACTCCAATACATGCTAACT ACACTTACTCTGTGGAGAAAGCCATCAATGCTGGAATTGACATGGTCATGGTCCCATTAAACTACACAGAGTTCATCACCGAACTAACACAACTAGTGAA CACCGGCTTCATCCCCACGACCCGGATCGACGATGCAGTGACCCGAATCCTCCGGGTCAAATTCTCCATGGGTCTGTTCGAGAACCCGATGTCCGACCAG AGCTTGGCCAACGAGCTTGGCAGCCCGGAACACAGAGAATTGGCGAGAGAAGCTGTGAGGAAATCGCTTGTGCTGTTGAAGAATGGGAAAGAAGCTAATT ATCAGCCATTGCTGCCATTGCCTAAGAAGGCTACAAAGATACTTGTTGCTGGATCACATGCTGATAATCTTGGATATCAGTGTGGTGGATGGTCGATTGA GTGGCAAGGATTCAGTGGCAACAATCAAACTTCGGGGACCACAATCCTCTCTGCAATCCGGACCGCAGTCGATCCAGCCACCGAAGTCGTCTACCACGAG AACCCCGACACACAATACCTAAGCTCCAACACCTTCTCATACACTATTGTTATCGTCGGTGAACACCCCTATGCAGAGTCAGCAGGAGACAACACGAACC TAACCATCCCCGAACCGGGGCCGACCACGATCCAGAACGTCTGCCGGTCGACAAAATGTGTCGTACTCGTCATCTCGGGCCGCCCCCTGGTGATCGAGCC CTATCTCGAAATGATGGACGCCCTGATCGCAGCCTGGCTCCCCGGGACCGAAGGCCGGGGAGTCGCCGATGTGTTGTTTGGTGACTATGGGTTCAGTGGG AAGCTTCCGAGGACTTGGTTTAAGAGAGTTGATCAGTTGCCTATGAATGTTGGTGATGATGAGGGATATGATCCTCTTTTCCCTTTTGGATTTGGTCTTA CTACTGTGCCTGTTATGGCAAATTGA
AA sequence Show only first row Show all	>Lus10005706 pacid=23168871 polypeptide=Lus10005706 locus=Lus10005706.g ID=Lus10005706.BGIv1.0 annot-version=v1.0 MGIRPRFGFGWKNHNLIMVLLGSTIALLLADAEEYMVYKDPNQPVEARVRDLLGRMTLPEKIGQMVQIDRSVASADVMKNYFIGSVLSGGGSVPEKGASP ETWIKMVDWFQSGALSTRLGIPMIYGIDAVHGHNNAYNATIFPHNVGLGATRDPELVKRIGAATALEIRATGIHYTFAPCVAVCRDPRWGRCYESYSEDP EVVKAMTELVTGLQGDLPPDHSLEGFPYVAGKRNVAACAKHYVGDGGTVNGINGNNTVSDWKNIEEIQMAGYRSSITKGVSSIMASYSSLNGVKMHANRD MIAGFLKNTLNFTGFVISDWKGIDLITTPIHANYTYSVEKAINAGIDMVMVPLNYTEFITELTQLVNTGFIPTTRIDDAVTRILRVKFSMGLFENPMSDQ SLANELGSPEHRELAREAVRKSLVLLKNGKEANYQPLLPLPKKATKILVAGSHADNLGYQCGGWSIEWQGFSGNNQTSGTTILSAIRTAVDPATEVVYHE NPDTQYLSSNTFSYTIVIVGEHPYAESAGDNTNLTIPEPGPTTIQNVCRSTKCVVLVISGRPLVIEPYLEMMDALIAAWLPGTEGRGVADVLFGDYGFSG KLPRTWFKRVDQLPMNVGDDEGYDPLFPFGFGLTTVPVMAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04885			Glycosyl hydrolase family prot...		Lus10005706 [exp]	0	1
AT2G23945			Eukaryotic aspartyl protease f...		Lus10019961 [exp]	1.0	0.8758
					Lus10001379 [exp]	2.0	0.8527
AT3G17152			Plant invertase/pectin methyle...		Lus10017077 [exp]	7.7	0.7212
AT1G55790			Domain of unknown function (DU...		Lus10032900 [exp]	7.9	0.7924
AT2G26490			Transducin/WD40 repeat-like su...		Lus10016289 [exp]	9.4	0.7879
AT5G09360		LAC14	laccase 14 (.1)		Lus10036070 [exp]	10.5	0.7879
AT5G55690	MADS		MADS-box transcription factor ...		Lus10019819 [exp]	10.7	0.6568
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10008919 [exp]	11.5	0.7879
AT4G02050		STP7	sugar transporter protein 7 (....		Lus10008372 [exp]	12.4	0.7879
AT3G18080		BGLU44	B-S glucosidase 44 (.1)		Lus10017997 [exp]	13.3	0.7879

Compare expression of checked genes

Lus10005706 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.