Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09890 839 / 0 Protein kinase family protein (.1.2) AT3G23310 631 / 0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT4G14350 626 / 0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein AT1G03920 618 / 0 Protein kinase family protein (.1) AT2G20470 615 / 0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT1G30640 603 / 0 Protein kinase family protein (.1) AT4G33080 599 / 0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1), AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.2) AT2G19400 581 / 0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT5G62310 259 / 1e-74 IRE INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT1G45160 257 / 3e-74 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042650 [exp] 1014 / 0 AT5G09890 857 / 0.0 Protein kinase family protein (.1.2) Lus10011814 [exp] 633 / 0 AT4G14350 888 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Lus10033911 [exp] 629 / 0 AT2G20470 831 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10003541 [exp] 627 / 0 AT2G20470 850 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10021176 [exp] 626 / 0 AT4G14350 861 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Lus10031332 [exp] 269 / 8e-78 AT3G17850 1526 / 0.0 Protein kinase superfamily protein (.1) Lus10005470 [exp] 258 / 3e-75 AT1G45160 977 / 0.0 Protein kinase superfamily protein (.1.2) Lus10027196 [exp] 257 / 1e-73 AT5G62310 1484 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10038912 [exp] 254 / 9e-73 AT5G62310 1483 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G125800 [exp] 899 / 0 AT5G09890 828 / 0.0 Protein kinase family protein (.1.2) Potri.014G028900 [exp] 878 / 0 AT5G09890 796 / 0.0 Protein kinase family protein (.1.2) Potri.005G226700 [exp] 646 / 0 AT2G20470 826 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.010G070600 [exp] 639 / 0 AT4G14350 894 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Potri.008G167800 [exp] 638 / 0 AT4G14350 905 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Potri.002G036200 [exp] 630 / 0 AT2G20470 857 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.011G157000 [exp] 622 / 0 AT4G14350 800 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Potri.006G224800 [exp] 617 / 0 AT4G33080 832 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1), AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.2) Potri.006G146900 [exp] 610 / 0 AT2G19400 755 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.002G263000 [exp] 273 / 1e-79 AT1G45160 1162 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00433 [flax] [poplar] Pkinase_C Protein kinase C terminal domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10005707 pacid=23180899 polypeptide=Lus10005707 locus=Lus10005707.g ID=Lus10005707.BGIv1.0 annot-version=v1.0 ATGGACGGCGGTGGTGATGGTACGGTGAGATTAGGGGCTTTGAACTTACGCCAGGAGCGGAGTGGTCTTGACTCTGGTCCGGATGTGTCTGTTTCCTCGC CGGTCACCAGGCAGAAAGCTGCTGCCGCCAAGCAGTTCATCGAGAATCATTACAAGAATTATTTGCAAGGATTGCAGGATCGTAAAGAGAGACGGCGGAC TCTCCAACGCAGAGCGCAAGAGGCTCAGGTATCAACTGAGGACCAGGAGGAATTGATGAAGAACCTGGCAAGGAGAGAAACTGAGTTCATGAGGCTCCAA AGACGCAAAGTTGGGATTGATGACTTCGAACAGTTGACTGTCATAGGTAAAGGCGCGTTCGGAGAGGAGCGGAGTGGTCTTGACTCTGGTCCGGATGTGT CTGTTTCCTCGCCGGTCACCAGGCAGAAAGCTGCTGCCGCCAAGCAGTTCATCGAGAATCATTACAAGAATTATTTGCAAGGATTGCAGGATCGTAAAGA GAGACGGCGGACTCTCCAACGCAGAGCGCAAGAGGCTCAGGTATCAACTGAGGACCAGGAGGAATTGATGAAGAACCTGGCAAGGAGAGAAACTGAGTTC ATGAGGCTCCAAAGACGCAAAGTTGGGATTGATGACTTCGAACAGTTGACTGTCATAGGTAAAGGCGCGTTCGGAGAGGTAAGGTTATGCCAGGCCAAAG GCACTGGAGAGATTTTTGCCATGAAGAAACTGAAGAAATCAGAAATGCTTAGTCGCGGCCAGGTTGAGCATGTTCGATCAGAACGGAATTTACTGGCAGA GGTTGACAGTCGCTGCATTGTAAAACTATTCTATTCTTTTCAAGATTCGGAGTTCTTATACCTCATCATGGAATATTTACCCGGTGGAGACATCATGACA CTACTGATGAGGGAAGATATTCTTTCTGAGGATGTAGCTCGCTTTTACATAGCTGAGAGCATCCTAGCTATACACTCAATTCATCAACACAATTATATTC ACAGGGACATAAAACCAGACAACCTCATACTGGATAAAAATGGCCATTTGAAGCTGTCAGACTTTGGTTTGTGCAAGCCCCTAGATGACAAGTATTCAAC TTTGCTGGAAAATGAAGACATTGTCACCCAGGATGCCACGAATGACAGTGGAGATAAGCCACCTTGGATGATGCCTAAGGAGCAATTACAACAATGGAAA CGCAATCGCCGTGCCCTTGCTTATTCAACTGTTGGAACTCTTGATTACATGGCACCTGAAGTGTTGCTGAAGAAGGGATACGGGATGGAATGTGATTGGT GGTCACTTGGAGCAATTATGTATGAAATGCTCGTTGGGTACCCACCCTTCTGTTCTGATGATCCAAGGATCACATGCCGAAAGATAATAAACTGGAAGAC ATGCATGAATTTCCCTGATGAGCCAAAGGTTTCAAATGAGGCCAAAGATCTGATCCGGCACTTGCTTTGTGATGTCGATACGAGACTGGGGACCAGAGGA GTAGAAGAATTGAAGGCACATCCATGGTTTAGATCCGTTCAATGGGATAAGCTGTATGAAATGGAGGCTGCATATAAGCCCACAGTCAATGGAGAGTTGG ACACGCAAAACTTTGAGAAGTTTCCTGAATTGGAAGGTGCACCGTCAGCAGGTCCCAGTGTGGGACCCTGGAGGAAGATGTTGGCTTCAAAAGATACCAA CTTCATTGGATTCACTTACAAGAAATCAGATGTTCTGAAATCTTTGGAAAACTCAGGCACGGACATGAAATCAAATGGGACTTCCAAGACCCCTTCCTTG ATTTCGTTGTTAGGTCGGATGGACTTGCAAGAAACAGCGATACCAGAAGGTGACGACAAGGCAGAATCCTGA
AA sequence Show only first row Show all	>Lus10005707 pacid=23180899 polypeptide=Lus10005707 locus=Lus10005707.g ID=Lus10005707.BGIv1.0 annot-version=v1.0 MDGGGDGTVRLGALNLRQERSGLDSGPDVSVSSPVTRQKAAAAKQFIENHYKNYLQGLQDRKERRRTLQRRAQEAQVSTEDQEELMKNLARRETEFMRLQ RRKVGIDDFEQLTVIGKGAFGEERSGLDSGPDVSVSSPVTRQKAAAAKQFIENHYKNYLQGLQDRKERRRTLQRRAQEAQVSTEDQEELMKNLARRETEF MRLQRRKVGIDDFEQLTVIGKGAFGEVRLCQAKGTGEIFAMKKLKKSEMLSRGQVEHVRSERNLLAEVDSRCIVKLFYSFQDSEFLYLIMEYLPGGDIMT LLMREDILSEDVARFYIAESILAIHSIHQHNYIHRDIKPDNLILDKNGHLKLSDFGLCKPLDDKYSTLLENEDIVTQDATNDSGDKPPWMMPKEQLQQWK RNRRALAYSTVGTLDYMAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFCSDDPRITCRKIINWKTCMNFPDEPKVSNEAKDLIRHLLCDVDTRLGTRG VEELKAHPWFRSVQWDKLYEMEAAYKPTVNGELDTQNFEKFPELEGAPSAGPSVGPWRKMLASKDTNFIGFTYKKSDVLKSLENSGTDMKSNGTSKTPSL ISLLGRMDLQETAIPEGDDKAES

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09890			Protein kinase family protein ...		Lus10005707 [exp]	0	1
AT2G17030			F-box family protein with a do...		Lus10023984 [exp]	2.2	0.8350
AT2G44500			O-fucosyltransferase family pr...		Lus10003914 [exp]	2.8	0.7948
AT5G62310		IRE	INCOMPLETE ROOT HAIR ELONGATIO...		Lus10027196 [exp]	6.6	0.8113
AT3G23340		CKL10	casein kinase I-like 10 (.1)		Lus10000553 [exp]	7.1	0.8109
AT1G47240		ATNRAMP2, NRAMP...	NRAMP metal ion transporter 2 ...		Lus10004317 [exp]	7.3	0.8036
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10025924 [exp]	9.0	0.8133
AT1G14000		VIK	VH1-interacting kinase (.1)		Lus10026626 [exp]	9.2	0.7877
AT1G55620		CLCF, ATCLC-F, ...	chloride channel F (.1.2)		Lus10032888 [exp]	10.0	0.8196
AT4G03340			Core-2/I-branching beta-1,6-N-...		Lus10031626 [exp]	11.0	0.7807
AT5G35570			O-fucosyltransferase family pr...		Lus10017171 [exp]	12.4	0.7808

Compare expression of checked genes

Lus10005707 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.