Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G45207 413 / 3e-138 Remorin family protein (.2) AT4G36970 156 / 7e-42 Remorin family protein (.1) AT2G02170 72 / 3e-13 Remorin family protein (.1.2) AT1G30320 68 / 6e-12 Remorin family protein (.1) AT1G67590 66 / 2e-11 Remorin family protein (.1.2) AT1G53860 66 / 3e-11 Remorin family protein (.1) AT3G61260 62 / 7e-11 Remorin family protein (.1) AT3G48940 58 / 1e-09 Remorin family protein (.1) AT5G23750 58 / 2e-09 Remorin family protein (.1.2) AT3G57540 58 / 6e-09 Remorin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042649 [exp] 865 / 0 AT1G45207 424 / 2e-141 Remorin family protein (.2) Lus10009750 [exp] 676 / 0 AT1G45207 445 / 8e-151 Remorin family protein (.2) Lus10010227 [exp] 662 / 0 AT1G45207 441 / 6e-149 Remorin family protein (.2) Lus10039007 [exp] 229 / 2e-69 AT4G36970 213 / 4e-65 Remorin family protein (.1) Lus10027302 [exp] 224 / 2e-67 AT4G36970 215 / 8e-66 Remorin family protein (.1) Lus10003936 [exp] 72 / 6e-13 AT1G53850 463 / 9e-162 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) Lus10014785 [exp] 64 / 1e-11 AT3G61260 177 / 1e-56 Remorin family protein (.1) Lus10038522 [exp] 65 / 3e-11 AT1G30320 296 / 2e-98 Remorin family protein (.1) Lus10018840 [exp] 64 / 3e-11 AT3G61260 206 / 1e-67 Remorin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G027900 [exp] 671 / 0 AT1G45207 442 / 1e-149 Remorin family protein (.2) Potri.002G125200 [exp] 646 / 0 AT1G45207 384 / 9e-127 Remorin family protein (.2) Potri.005G138500 [exp] 297 / 2e-95 AT4G36970 231 / 1e-71 Remorin family protein (.1) Potri.001G163000 [exp] 97 / 4e-21 AT1G53860 333 / 6e-110 Remorin family protein (.1) Potri.007G044350 [exp] 81 / 1e-17 AT4G36970 100 / 4e-25 Remorin family protein (.1) Potri.008G144300 [exp] 74 / 9e-14 AT2G02170 431 / 5e-147 Remorin family protein (.1.2) Potri.002G157700 [exp] 67 / 2e-12 AT3G61260 167 / 2e-52 Remorin family protein (.1) Potri.014G081300 [exp] 66 / 3e-12 AT3G61260 199 / 4e-65 Remorin family protein (.1) Potri.008G178300 [exp] 68 / 5e-12 AT1G67590 306 / 1e-102 Remorin family protein (.1.2) Potri.010G056800 [exp] 67 / 9e-12 AT1G67590 253 / 8e-82 Remorin family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03763 [flax] [poplar] Remorin_C Remorin, C-terminal region
Representative CDS sequence Show only first row Show all	>Lus10005708 pacid=23180895 polypeptide=Lus10005708 locus=Lus10005708.g ID=Lus10005708.BGIv1.0 annot-version=v1.0 ATGCCGGAGCCAGCACCAAATCTTCACCTAAATCATTCCTCGTCGACGCCAGCGGCCACTTTCAGAGCGCGAGACGCCAGTCCAGACTCCGTCATTTTCA GTCTTTTCTCCTCCACCTCCAACAGCGTCGAACGCTGCTCTTTTGCTTCCGAAGATCACAATAACGACTCCCTTGCCTCCGACTTCCTCTCATCGCATTT GGCAGCGACCGGCGGCGGGATTGAACGACTGGAGAGTTGCAGTGGTGGTCCAGATTATCAAGGAGATCTAGATCGGAACCAAGCTTCTGTGCTACTGAAC AACCAGAACAAGCACGGCAATCAGCTGGCTCGAGTTTCATTCAGAAAGAGTGATAAAGTGAAAGCTCAAAAGGACGAAAGCAACATAAGAGCTATTTCTA CAGAAGGAGGATTCCAGCTGCTGGATTCAGCTAGGAGCTCATTTTCTCTCGCTCTGAAAGAGTGTCAAGATCGGAGATCCAGATCTGAAGCGGCAGCGAA GAAGAGCGACAGGAGGAGACCTGCTTCCCTAGATTTGAACAATGTCGTCCCAGCGTCGTCGCCGCGGTTAGGGGCTGTGAAACAGACCTCAATCTCGTTG TCTCGCAAGTCCGGAACGTTTCCTAGCCCAGGCACGCCAAACTACCGTCACGCGAGTGTTGGATTAATGCAGAAAGGCTGGAGTTCAGAGAGAGTGCCGC CGCTGCATGCCGGCGGCAACAGACGCCAAATAAGCGGCGGGGCGTTGTTCCCTTACAATAACGGGAGGGCTTTGCCATCGAAGTGGGAGGATGCCGAGCG ATGGATTTTCAGCCCTGTTTCTGGCGACGGTGTTGTGAGGACGTCGGTTCCGCTTCCTCAGAGAAGACCAAAATCCAAGAGTGGACCGCTAGGGCCACCT GGCGTTGCTTATTATTCGCTGTTTTCGCCGGCAGTACCGGCCATTGATTGTGGGAATATGAGGAACTTCACGGTTGGTTCTCCCTTTTCCGCCGGTGTTA TAGCTGCTGATGGATTTACTTCTCGTCCTAATCGCCATGGAGTTGCATTTCCATTCCGGACAGAGCCTTGCATGGCCCGTTCTGTAAGTGTCCATGGATG TTCTGAGATGTTAGATCAGACTTACTCCTTCCCGAATCAAGAAAATAGAGTCGAAAATGTCAAAGATGCTGCCACCGACATATCCCGAGCTGTTTCAAGA AGAGACATGGCTACTCAAATGAGTCCTGCGAGCAGTAACCATTCATCTCCTAGCAAGAGGCTGTCTTTTACTACTTCCTCCCCCTCTGCTCTGCCAATTG TGGAACTGCAAAGTGTACAGTCCTCTAAATCAGAAGTTAGGGATGTGCAGGTAGATGAAAGGGTTTCTGTTACAAGATGGTCCAGAAGGCATAGGGGTGG CAACAATAGTAAGGGATCTGATATTGCTGACGACTGTAGAAAGAAAGTCGTTGCCTGTCGGTCTTCAGCTTGGGAGGTTGCAGAGCCCACTAAAGGCATT TCAAAAGCTCAAACAGAGGAAGCCAAAATCTCGGCATGGGAGAATCTGCAGAAGGCAAAAGCTGAGGCATCAATAAGGAAGCTTGAGATGAAGTTGGAAA AGAAGAGGTCGACCTCCATGGACAAGATTATGAACAAACTGAGATCAGCCCAGAAGAGAGCACAAGAAATGAGAAGTTCAGTCCTGTCCAACCAGGCTCG TCAAGTTTCACGCACCACTGACAAGACAGTGTCATTCAGGAGAACCCGCCAGATGGGTACACTGAGCGGCTGCTTTACTTGCCACGCTTTCTAA
AA sequence Show only first row Show all	>Lus10005708 pacid=23180895 polypeptide=Lus10005708 locus=Lus10005708.g ID=Lus10005708.BGIv1.0 annot-version=v1.0 MPEPAPNLHLNHSSSTPAATFRARDASPDSVIFSLFSSTSNSVERCSFASEDHNNDSLASDFLSSHLAATGGGIERLESCSGGPDYQGDLDRNQASVLLN NQNKHGNQLARVSFRKSDKVKAQKDESNIRAISTEGGFQLLDSARSSFSLALKECQDRRSRSEAAAKKSDRRRPASLDLNNVVPASSPRLGAVKQTSISL SRKSGTFPSPGTPNYRHASVGLMQKGWSSERVPPLHAGGNRRQISGGALFPYNNGRALPSKWEDAERWIFSPVSGDGVVRTSVPLPQRRPKSKSGPLGPP GVAYYSLFSPAVPAIDCGNMRNFTVGSPFSAGVIAADGFTSRPNRHGVAFPFRTEPCMARSVSVHGCSEMLDQTYSFPNQENRVENVKDAATDISRAVSR RDMATQMSPASSNHSSPSKRLSFTTSSPSALPIVELQSVQSSKSEVRDVQVDERVSVTRWSRRHRGGNNSKGSDIADDCRKKVVACRSSAWEVAEPTKGI SKAQTEEAKISAWENLQKAKAEASIRKLEMKLEKKRSTSMDKIMNKLRSAQKRAQEMRSSVLSNQARQVSRTTDKTVSFRRTRQMGTLSGCFTCHAF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G45207			Remorin family protein (.2)		Lus10005708 [exp]	0	1
AT2G42520			P-loop containing nucleoside t...		Lus10000849 [exp]	2.2	0.8600
AT1G80660		AHA9	H\(+\)-ATPase 9, H\(+\)-ATPase...		Lus10026093 [exp]	3.9	0.8256
AT1G55690			Sec14p-like phosphatidylinosit...		Lus10008360 [exp]	4.0	0.8110
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10015055 [exp]	4.2	0.8514
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Lus10018651 [exp]	4.2	0.8552
AT2G36390		SBE2.1, BE3	BRANCHING ENZYME 3, starch bra...		Lus10012264 [exp]	7.9	0.8163
					Lus10022956 [exp]	14.9	0.7302
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10026774 [exp]	16.1	0.8297
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Lus10008739 [exp]	17.5	0.8105
AT1G04520		PDLP2	plasmodesmata-located protein ...		Lus10014475 [exp]	18.2	0.7907

Compare expression of checked genes

Lus10005708 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.