Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42930 501 / 3e-175 alpha/beta-Hydrolases superfamily protein (.1) AT1G56630 466 / 3e-161 alpha/beta-Hydrolases superfamily protein (.1) AT1G45201 440 / 3e-151 AtTLL1 ARABIDOPSIS THALIANA TRIACYLGLYCEROL LIPASE-LIKE 1, triacylglycerol lipase-like 1 (.1.2) AT5G67050 388 / 9e-131 alpha/beta-Hydrolases superfamily protein (.1) AT3G14360 330 / 7e-108 alpha/beta-Hydrolases superfamily protein (.1) AT2G30550 67 / 1e-11 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G18640 57 / 1e-08 alpha/beta-Hydrolases superfamily protein (.1) AT1G30370 55 / 7e-08 DLAH DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) AT2G44810 53 / 2e-07 DAD1 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) AT5G18630 52 / 3e-07 alpha/beta-Hydrolases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042648 [exp] 890 / 0 AT5G42930 514 / 2e-180 alpha/beta-Hydrolases superfamily protein (.1) Lus10005092 [exp] 423 / 1e-144 AT5G42930 490 / 2e-171 alpha/beta-Hydrolases superfamily protein (.1) Lus10009361 [exp] 394 / 8e-133 AT5G42930 478 / 4e-166 alpha/beta-Hydrolases superfamily protein (.1) Lus10003925 [exp] 352 / 4e-116 AT3G14360 574 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10037465 [exp] 349 / 5e-115 AT3G14360 584 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10038524 [exp] 57 / 2e-08 AT1G30370 526 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10023281 [exp] 57 / 3e-08 AT1G30370 342 / 2e-113 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10015521 [exp] 56 / 5e-08 AT1G30370 524 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10033968 [exp] 55 / 7e-08 AT5G18640 463 / 5e-164 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G027800 [exp] 544 / 0 AT5G42930 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G027400 [exp] 531 / 0 AT5G42930 529 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G027500 [exp] 531 / 0 AT5G42930 529 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G044500 [exp] 449 / 9e-155 AT5G67050 502 / 7e-176 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G138800 [exp] 433 / 2e-148 AT5G42930 433 / 7e-149 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G161500 [exp] 347 / 1e-113 AT3G14360 633 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G073800 [exp] 333 / 1e-108 AT3G14360 619 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G057900 [exp] 64 / 1e-10 AT1G30370 626 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Potri.001G263200 [exp] 61 / 1e-09 AT1G30370 607 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Potri.005G218500 [exp] 56 / 3e-08 AT1G06800 652 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10005709 pacid=23180897 polypeptide=Lus10005709 locus=Lus10005709.g ID=Lus10005709.BGIv1.0 annot-version=v1.0 ATGGCGCCTAATGATGGCGATGTAATGATGATGAATGACGATGGACAAGTAGTAGACATTAATAGATTGTTGCTGCAGCCAGAGGAAGCTGGGCTATGGG ATCTCATTCTTTTACTCTGGAGCTCCGACGTCCAAAGTAGAAAATTCGTGGAGTGCTCCCATCAACAAGCTAATGAGACGTCGACGACGGAGGTGAACGA TTTCCATCCAAGATGGCTGATATTCATCTCCGTGATTTCACAGAAGTTGTTTCTTCGCTCCAAAGGCACATTGGATAGTCTAGGCAGGGGACTTGAGATG TGGCTCAATCTCCTCTCCACCAATGCCGGATGTCTCAACCTCCTCTTCAATCTCATCATCAAGCGGGAGGTGGAGTGGCCGGAGAGGTCATCGGCGGAAT TTAGGTCGTTGATTGGGAACCTTGACCTGAGTGTGGAGATGATGAGAACTCCAGGCCACAGGAGATACAAGGCTGTCTTGTCCTTAATGGCTGCCAAACT GTCGTACGAGAATGAGGCCTTTGTTAAATCCGTTGTCCAAGATCGTTGGAATATGGAATTCAAGGGGTTCTACAATTTTTGGAATGAATACCAAGGAGAA GCATCAACACAAGCCATAGCGTTCAAAGACACCAAAAGCGAGCCCAACCTAACAACATTGGCATTCAGAGGGACATCCCCGTTCGATGCCGCTGCATGGT GCACCGACTTAGACCTCTCCTGGTACCAAATCCAAGGCGTTGGAAAAATCCACCGTGGTTTCATGAAGGCCCTGGGCCTCCAAAAGAACGGCTGGCCACT CGAATTGAAGAGGAACGACGTCGACGCTGATCAGCTCCATCCTTATGCATATTACTTCATGAGGGAAATGCTGAGGGATGAACTTCGAAAGGACCCGGAT TCCAAGTTTATAGTGACGGGACACAGCCTTGGTGGTGCCCTGGCGATACTGTTTGTTGGTATTTTGGCGATGCATGGAGAAGCAGAGTTGTTGCAGAGAT TGGAAGGGGTTTACACCTTCGGGCAGCCCAGAGTTGGGGATCAACAGTTTGGTGAATTCATGGAAGGGAAGCTCAAGGAGTATGGAGTTAAGTATATGAG GTTTGTGTATGCTAATGACGTGGTTCCGAGGTTGCCTTATGATGATAAGACTCTATTTTACAAGCATTTTGGACCTACCTTATTCTATAATAGCTGCTAC AAAGTCAAGGTAATGGAGGAGGAGCCCAATAAGAACTATTTCGGGGTGTTGTGGGTGGTGCCAAAGGTACTGAATGCGGTGTGGGAGTTGGTAAGGAGTT TCATAGGTCCATACATAAGCATAAGAGGGAAGGAGATGAGAGATAGTTGGTTAATGAGAGTGTTTAGGGTCATAGGGTTGGTGCTTCCTGGTTTAGCTAA TCACTGTCCTCAAGATTATGACAACTGCACCAGATTCGGAGATTGGCCCAAGTCTCTCCAACCCCATGGTTACTACTCGCCCACTCATCTAGATTAA
AA sequence Show only first row Show all	>Lus10005709 pacid=23180897 polypeptide=Lus10005709 locus=Lus10005709.g ID=Lus10005709.BGIv1.0 annot-version=v1.0 MAPNDGDVMMMNDDGQVVDINRLLLQPEEAGLWDLILLLWSSDVQSRKFVECSHQQANETSTTEVNDFHPRWLIFISVISQKLFLRSKGTLDSLGRGLEM WLNLLSTNAGCLNLLFNLIIKREVEWPERSSAEFRSLIGNLDLSVEMMRTPGHRRYKAVLSLMAAKLSYENEAFVKSVVQDRWNMEFKGFYNFWNEYQGE ASTQAIAFKDTKSEPNLTTLAFRGTSPFDAAAWCTDLDLSWYQIQGVGKIHRGFMKALGLQKNGWPLELKRNDVDADQLHPYAYYFMREMLRDELRKDPD SKFIVTGHSLGGALAILFVGILAMHGEAELLQRLEGVYTFGQPRVGDQQFGEFMEGKLKEYGVKYMRFVYANDVVPRLPYDDKTLFYKHFGPTLFYNSCY KVKVMEEEPNKNYFGVLWVVPKVLNAVWELVRSFIGPYISIRGKEMRDSWLMRVFRVIGLVLPGLANHCPQDYDNCTRFGDWPKSLQPHGYYSPTHLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42930			alpha/beta-Hydrolases superfam...		Lus10005709 [exp]	0	1
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10017428 [exp]	3.5	0.9513
AT1G06550			ATP-dependent caseinolytic (Cl...		Lus10020758 [exp]	6.0	0.9093
AT5G45970		ATRAC2, ATROP7,...	RHO-RELATED PROTEIN FROM PLANT...		Lus10015298 [exp]	6.5	0.9474
AT3G14170			Plant protein of unknown funct...		Lus10013177 [exp]	8.8	0.9367
AT3G29200		ATCM1, CM1	ARABIDOPSIS THALIANA CHORISMAT...		Lus10019795 [exp]	10.5	0.8775
AT1G61240			Protein of unknown function (D...		Lus10038303 [exp]	16.3	0.8228
AT4G00350			MATE efflux family protein (.1...		Lus10014760 [exp]	17.0	0.8916
AT3G59480			pfkB-like carbohydrate kinase ...		Lus10013611 [exp]	17.4	0.9343
AT3G53520		ATUXS1, UXS1	UDP-glucuronic acid decarboxyl...		Lus10024436 [exp]	18.9	0.9187
AT2G46225		ABIL1, ABI1L1	ABI-1-like 1 (.1.2.3)		Lus10008737 [exp]	19.0	0.8979

Compare expression of checked genes

Lus10005709 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.