Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67060 148 / 1e-43 bHLH HEC1, bHLH088 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G50330 147 / 2e-43 bHLH HEC2, bHLH037 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G21330 131 / 6e-36 bHLH bHLH087 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G00120 125 / 2e-35 bHLH IND1, GT140, bHLH040, IND, EDA33 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G09750 118 / 2e-32 bHLH HEC3, bHLH043 HECATE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G01310 86 / 1e-18 bHLH APTX, bHLH140 APRATAXIN-like (.1) AT5G43175 80 / 8e-18 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G33880 81 / 1e-17 bHLH RSL2, bHLH085 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) AT1G27740 79 / 2e-17 bHLH bHLH054, ROOT HAIR DEFECTIVE 6-LIKE 4(RSL4) root hair defective 6-like 4 (.1) AT5G37800 80 / 3e-17 bHLH ATRSL1, bHLH086 ARABIDOPSIS THALIANA RHD SIX-LIKE 1, RHD SIX-LIKE 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042647 [exp] 299 / 1e-102 AT3G50330 163 / 1e-49 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10012670 [exp] 147 / 9e-44 AT3G50330 158 / 3e-48 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10033488 [exp] 138 / 3e-40 AT4G00120 143 / 4e-43 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10003500 [exp] 108 / 3e-27 AT3G21330 192 / 5e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10009745 [exp] 101 / 5e-25 AT3G21330 112 / 2e-29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10002213 [exp] 87 / 1e-20 AT5G01310 108 / 8e-28 APRATAXIN-like (.1) Lus10003386 [exp] 89 / 4e-20 AT5G01310 107 / 1e-24 APRATAXIN-like (.1) Lus10001068 [exp] 81 / 2e-17 AT4G33880 179 / 2e-53 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) Lus10004315 [exp] 81 / 3e-17 AT4G33880 179 / 3e-53 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G125000 [exp] 176 / 2e-54 AT5G67060 137 / 2e-39 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.007G044600 [exp] 170 / 2e-52 AT5G67060 150 / 7e-45 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G027300 [exp] 170 / 7e-52 AT5G67060 141 / 6e-41 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G138900 [exp] 150 / 2e-44 AT3G50330 134 / 2e-38 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.007G108000 [exp] 142 / 1e-41 AT4G00120 150 / 3e-45 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G060900 [exp] 141 / 5e-41 AT4G00120 151 / 7e-46 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G191800 [exp] 124 / 6e-33 AT3G21330 230 / 2e-71 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.006G102600 [exp] 93 / 2e-23 AT5G01310 112 / 4e-29 APRATAXIN-like (.1) Potri.016G120800 [exp] 92 / 9e-23 AT5G01310 109 / 3e-28 APRATAXIN-like (.1) Potri.017G126800 [exp] 81 / 2e-17 AT5G37800 203 / 3e-63 ARABIDOPSIS THALIANA RHD SIX-LIKE 1, RHD SIX-LIKE 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10005710 pacid=23180898 polypeptide=Lus10005710 locus=Lus10005710.g ID=Lus10005710.BGIv1.0 annot-version=v1.0 ATGGAAAGGTACTCCTCATCATCATCCTCCACAGATGATCATCAAGACCACCAAACCACCACCACCATGCCAATGGAGTCCATGCTTATGATGATGGACA AGCATCATCAGCTCCCTGTCGTCGACGACTATCTCTACTCCTTTGACTACGGTGGTCCAGCTAATCCCACCACCACCACCACCACCATTAACCCATTCAC CACCAACAACAACCCACTTCCTTCAACTACCTTATCCTTTTCCACTACATCTCAAGATCAGCAACCAATCTCATGGAGAGATCTCATGATGACGCCTGAA TCTGCAGGTAATGATAATGCCGTCAATGGTCGAGGTATGGGGTCGAATAATAGTAACAACAAGGCGTCGATGGCGGCAATGAGGGAGATGATATTCAGGA TAGCGGCGATGCAGCCGATCCACATAGACCCTGAGTCGGTGAAGCCACCCAAAAGGAGGAACGTCAAGATATCTAAAGACCCGCAGAGCGTGGCGGCGCG TCACAGGAGGGAGAGGATTAGCGAGAAGATTAGGATACTTCAGAGGCTAGTCCCAGGTGGTACTAAGATGGACACTGCTTCCATGTTGGATGAAGCTATC CATTACGTTAAGTTCTTAAAGAACCAAGTCCAGTCTCTTGAGCGCACTGCTCCTCCTCATCGCCCGCCGGCAGCTGGCATTGGGTTTCCTGTGCCTGTCA CTAGTGGCCATTGGAAAAGTGGTTATAATCAACAGCCGCCGGCGTACCAAGATATTTCCGGTTATGGGGATGCTTAA
AA sequence Show only first row Show all	>Lus10005710 pacid=23180898 polypeptide=Lus10005710 locus=Lus10005710.g ID=Lus10005710.BGIv1.0 annot-version=v1.0 MERYSSSSSSTDDHQDHQTTTTMPMESMLMMMDKHHQLPVVDDYLYSFDYGGPANPTTTTTTINPFTTNNNPLPSTTLSFSTTSQDQQPISWRDLMMTPE SAGNDNAVNGRGMGSNNSNNKASMAAMREMIFRIAAMQPIHIDPESVKPPKRRNVKISKDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAI HYVKFLKNQVQSLERTAPPHRPPAAGIGFPVPVTSGHWKSGYNQQPPAYQDISGYGDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50330	bHLH	HEC2, bHLH037	HECATE 2, basic helix-loop-hel...		Lus10005710 [exp]	0	1
AT4G36380		ROT3	ROTUNDIFOLIA 3, Cytochrome P45...		Lus10041794 [exp]	2.0	0.9104
AT1G52800			2-oxoglutarate (2OG) and Fe(II...		Lus10013132 [exp]	11.8	0.8511
AT4G35690			Arabidopsis protein of unknown...		Lus10028382 [exp]	12.0	0.7941
AT5G02580			Plant protein 1589 of unknown ...		Lus10024432 [exp]	12.7	0.7881
AT5G15290		CASP5	Casparian strip membrane domai...		Lus10015375 [exp]	16.1	0.8472
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10034045 [exp]	19.0	0.8441
AT2G41540		GPDHC1	6-phosphogluconate dehydrogena...		Lus10031052 [exp]	19.1	0.8047
					Lus10025501 [exp]	19.8	0.8554
AT3G11550		CASP2	Casparian strip membrane domai...		Lus10004205 [exp]	20.9	0.8481
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10002547 [exp]	21.5	0.8192

Compare expression of checked genes

Lus10005710 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.