Plant FIBer expression Database

Lus10005715 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G15760 72 / 9e-17 unknown protein
AT1G52565 66 / 2e-14 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030098
[exp]
225 / 1e-76 AT3G15760 77 / 2e-18 unknown protein
Lus10019413
[exp]
113 / 1e-32 AT3G15760 61 / 7e-13 unknown protein
Lus10043269
[exp]
108 / 1e-30 AT3G15760 61 / 1e-12 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G069100
[exp]
137 / 7e-42 AT1G52565 67 / 7e-15 unknown protein
Potri.018G131100
[exp]
129 / 6e-39 AT3G15760 75 / 5e-18 unknown protein
Potri.001G192800
[exp]
82 / 2e-20 AT1G52565 95 / 6e-26 unknown protein
PFAM info
Representative CDS sequence
>Lus10005715 pacid=23175364 polypeptide=Lus10005715 locus=Lus10005715.g ID=Lus10005715.BGIv1.0 annot-version=v1.0
ATGTCTTCTATGCTCTGCTCCCAAGGCGTCGCCGTCGCCACCGCCATGGCCGTCTCCGGCACTGTTATCCTCCTTGCCCTCCGCCTCCAGAAATCCCTCC
CTACCGCCCAATTCTCCCTCCACAACCATCACCACTCGCCGATTTCTCGCCGCCGCTCGCTACCGACAACCCCGCTGCCTCTCCGATCTTGCATCTCTTC
AGATGAGAAGAAGAGCAAGAAGAGGAGCAAAAAGAAGAAGAAAGTCCACTTTGCGGAGGATGTAGTGGAATCGAGGGGAAACGGGGAAGAATTTAGGAGG
CACTGCGACGCCATTGCTGCGGCTGCCAGGCTGAGCCGCTCCTCCTCTGCCGACGATTCACAGCCTCAGGGGCGGGAGTCGCGTTCAACATCGAGAGACA
GGGGAATCCCAGCGAACAGACTGGCTCTCTACTCGGGCATCCTCAGAGATCGAGGAGTTCAGCGATTGGCCTACTCTCACTGA
AA sequence
>Lus10005715 pacid=23175364 polypeptide=Lus10005715 locus=Lus10005715.g ID=Lus10005715.BGIv1.0 annot-version=v1.0
MSSMLCSQGVAVATAMAVSGTVILLALRLQKSLPTAQFSLHNHHHSPISRRRSLPTTPLPLRSCISSDEKKSKKRSKKKKKVHFAEDVVESRGNGEEFRR
HCDAIAAAARLSRSSSADDSQPQGRESRSTSRDRGIPANRLALYSGILRDRGVQRLAYSH

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G15760 unknown protein Lus10005715
[exp]
0 1
Lus10017606
[exp]
1.4 0.9222
AT3G02380 CO ATCOL2, COL2 CONSTANS-like 2 (.1) Lus10005106
[exp]
3.5 0.9174
AT1G75100 JAC1 J-domain protein required for ... Lus10032709
[exp]
5.5 0.8681
AT1G72030 Acyl-CoA N-acyltransferases (N... Lus10021995
[exp]
6.0 0.9082
AT1G72030 Acyl-CoA N-acyltransferases (N... Lus10042534
[exp]
7.7 0.8936
AT5G19855 AtRbcX2 homologue of cyanobacterial Rb... Lus10030141
[exp]
13.7 0.8832
AT5G42800 M318, TT3, DFR dihydroflavonol 4-reductase (.... Lus10023096
[exp]
14.3 0.8106
AT5G64840 ABCF5, ATGCN5 ATP-binding cassette F5, gener... Lus10005798
[exp]
14.3 0.8888
AT4G27030 FADA, FAD4 FATTY ACID DESATURASE 4, fatty... Lus10037808
[exp]
14.4 0.8790
AT3G09600 MYB LCL5 (LHY-CCA1-... REVEILLE 8, LHY-CCA1-LIKE5, Ho... Lus10014015
[exp]
16.3 0.8393

Lus10005715 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.