Plant FIBer expression Database

Lus10005720 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030090
[exp]
291 / 1e-100 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G069900
[exp]
232 / 2e-77 ND /
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF11317 DUF3119 Protein of unknown function (DUF3119)
Representative CDS sequence
>Lus10005720 pacid=23175363 polypeptide=Lus10005720 locus=Lus10005720.g ID=Lus10005720.BGIv1.0 annot-version=v1.0
ATGTCTGGCACCCAAACGTTTCACCTTTGGAAAGAAGGGAAGATTGGCCAAGAAAGAAAAGACGAGAGTGGAGAAGAGAGCAGAAGAAGACATGGCAACT
GCTCTCTTATCAATCTCCACCTTTCTTCCTTCAAAAAAATAGTTCATTGCACAGCAAAGTGTCCTGTAATCCGAATCCTACTAGGACGCGGATTAGCAGC
ATCCAAGGAGGAAGGACTTGGTAGGAAGAAAGCACAGAAGAAAGAAACTGTTATTCCTGACCCAGACTACAGGATCCCAATTGTCCTTCTCGGTACGGCT
GGAGGCTTAGCGTACACGGATAACATTTTACCAGCAGTGCCAATTGGCCTTCTTGGATTGCTTCTCTTGTTTCAGACTACCAGAGTGAGATTTGTGTTTG
ACAGCGAGGCCTTGGAAGTAAGAATAGGACAGCAGCTCGACAAGTCAGGCGAAAATGCCTTTGTCGGAGGGGAGAATCGCTGGAAGTATTCCACTTTTGT
GAACTGGGAAATATGGTGGCCCAACTTCCCTATCCTGGTTTACTTCAAGGAGACGCAAACCAAACCTGAAGGACAAATCCACTTCTTCCCAGTTATTTTT
AATGGTAAACAGCTTTTTGATGTTATGGTGGAGAGAGCTGGCTTTTCGAAGAATAGTGCACCGAAATAA
AA sequence
>Lus10005720 pacid=23175363 polypeptide=Lus10005720 locus=Lus10005720.g ID=Lus10005720.BGIv1.0 annot-version=v1.0
MSGTQTFHLWKEGKIGQERKDESGEESRRRHGNCSLINLHLSSFKKIVHCTAKCPVIRILLGRGLAASKEEGLGRKKAQKKETVIPDPDYRIPIVLLGTA
GGLAYTDNILPAVPIGLLGLLLLFQTTRVRFVFDSEALEVRIGQQLDKSGENAFVGGENRWKYSTFVNWEIWWPNFPILVYFKETQTKPEGQIHFFPVIF
NGKQLFDVMVERAGFSKNSAPK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10005720
[exp]
0 1
AT3G55800 SBPASE sedoheptulose-bisphosphatase (... Lus10040228
[exp]
1.4 0.9759
Lus10030090
[exp]
2.0 0.9594
AT5G13720 Uncharacterised protein family... Lus10016380
[exp]
2.6 0.9489
AT3G55800 SBPASE sedoheptulose-bisphosphatase (... Lus10028261
[exp]
3.5 0.9663
AT5G45680 ATFKBP13 FK506 BINDING PROTEIN 13, FK50... Lus10006949
[exp]
3.5 0.9659
AT1G73060 LPA3 Low PSII Accumulation 3 (.1) Lus10002315
[exp]
4.5 0.9469
AT3G24430 HCF101 HIGH-CHLOROPHYLL-FLUORESCENCE ... Lus10019395
[exp]
5.0 0.9510
AT3G15360 ATHM4, ATM4, TR... ARABIDOPSIS THIOREDOXIN M-TYPE... Lus10029752
[exp]
5.1 0.9427
AT1G64860 SIGB, SIG2, SIG... RNApolymerase sigma subunit 2,... Lus10009541
[exp]
6.9 0.9428
AT1G12250 Pentapeptide repeat-containing... Lus10032239
[exp]
7.7 0.9508

Lus10005720 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.