Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26680 408 / 9e-144 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019418 [exp] 490 / 4e-176 AT2G26680 460 / 4e-164 unknown protein Lus10030089 [exp] 487 / 1e-174 AT2G26680 400 / 4e-140 unknown protein Lus10043275 [exp] 488 / 2e-174 AT2G26680 457 / 6e-162 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G119800 [exp] 460 / 2e-164 AT2G26680 449 / 4e-160 unknown protein Potri.014G017900 [exp] 459 / 4e-164 AT2G26680 457 / 2e-163 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005721 pacid=23175367 polypeptide=Lus10005721 locus=Lus10005721.g ID=Lus10005721.BGIv1.0 annot-version=v1.0 ATGGCGAATGGCTGGAGAAGAGAAAGCAGCAGACACCCAAAGCTCCTATCACCAAAGCCTCTCCTCCTCCTTCTCCTATCCCTCACCCTCCTTCTCCTCT TCCTCTTCCTCTCTTATCGTTCCCCTTCAAACCCTAACCTCAATTCCTTCTCCCGCTCCTCAAATTCCTACCCAATCCCTCCTTTCAACTGCCTGAATTC GCCGCAAGCTCACCCTGTAATTGCCAATTTGGTGGAAACTGTCAAGTATCCTTTCCTTTACTCTCTGTCCGATTTCGGATCCCTACCCGATAAGCCTCAC AAGAACATTGTCAGGCTGCTGAAAGGGAAGCTGTTCCGTAAGCCTGATATCTCTGTCACGGTGCAGGAGCTTCTCCAAGGGAAGAAGACAGATGCCGGGG TGGTTGTGGACGTGGGTGCTAATGTGGGAATGGCCAGCTTTGCAGCTGCTGTTATGGGGTTTAAAGTTTTGGCCTTTGAGCCTGTAATGGAGAATTTGCA GAGGATTTGTGATGGGATTTGGTTTAATCGAATTGGGGAGTTGGTTACTGTTTTTGAGGCTGCTGCTTCTGATCATGTTGGGAATATCACTTTTTATAAG TTGGTTGGGCGGCTTGACAATAGTGCTATATCAGCAACGGGTGCAAAATTGGCATTCAAGTCCAACGAGGAAATAGCAGTTCAAGTAAGGACCATCCCTC TGGATGAAGTAATCCCAGATTCACAGTCAGTGCTTCTCCTTAAAATTGATGTTCAAGGCTGGGAGTATCATGTCTTGAGAGGGGCCTCAAAGCTGCTTTC TAGAAATAAGGATGAAGCACCGTATCTCATTTATGAAGAAGATGAACGTTTGCTCCAAGCCAGCAATAGCAGCTCCAAAGAGATCCGTGATTTCCTCCAT ACTGTTGGGTACCATCACTGTACTCAGCACGGTGGCGACGCCCACTGTACCAAGGATTTGTGA
AA sequence Show only first row Show all	>Lus10005721 pacid=23175367 polypeptide=Lus10005721 locus=Lus10005721.g ID=Lus10005721.BGIv1.0 annot-version=v1.0 MANGWRRESSRHPKLLSPKPLLLLLLSLTLLLLFLFLSYRSPSNPNLNSFSRSSNSYPIPPFNCLNSPQAHPVIANLVETVKYPFLYSLSDFGSLPDKPH KNIVRLLKGKLFRKPDISVTVQELLQGKKTDAGVVVDVGANVGMASFAAAVMGFKVLAFEPVMENLQRICDGIWFNRIGELVTVFEAAASDHVGNITFYK LVGRLDNSAISATGAKLAFKSNEEIAVQVRTIPLDEVIPDSQSVLLLKIDVQGWEYHVLRGASKLLSRNKDEAPYLIYEEDERLLQASNSSSKEIRDFLH TVGYHHCTQHGGDAHCTKDL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26680			unknown protein		Lus10005721 [exp]	0	1
AT5G59740			UDP-N-acetylglucosamine (UAA) ...		Lus10005881 [exp]	5.7	0.7756
AT3G19540			Protein of unknown function (D...		Lus10024790 [exp]	13.6	0.7734
AT1G45000			AAA-type ATPase family protein...		Lus10028807 [exp]	26.8	0.7044
AT1G26110		DCP5	decapping 5 (.1.2)		Lus10034747 [exp]	28.6	0.7705
AT5G28740			Tetratricopeptide repeat (TPR)...		Lus10022346 [exp]	28.8	0.7540
AT1G15810			S15/NS1, RNA-binding protein (...		Lus10010090 [exp]	34.5	0.6605
AT3G19540			Protein of unknown function (D...		Lus10018707 [exp]	34.6	0.7344
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10036914 [exp]	36.2	0.7310
AT2G33610		CHB2, ATSWI3B	CHROMATIN REMODELING COMPLEX S...		Lus10016043 [exp]	37.3	0.7332
AT4G13710			Pectin lyase-like superfamily ...		Lus10042509 [exp]	48.4	0.6797

Compare expression of checked genes

Lus10005721 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.