Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51200 2245 / 0 EMB3142 EMBRYO DEFECTIVE 3142, Protein of unknown function (DUF3414) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030088 [exp] 3299 / 0 AT5G51200 2380 / 0.0 EMBRYO DEFECTIVE 3142, Protein of unknown function (DUF3414) (.1) Lus10021194 [exp] 141 / 1e-37 ND / Lus10012671 [exp] 137 / 2e-36 ND / Lus10005469 [exp] 130 / 4e-34 ND / Lus10033023 [exp] 123 / 5e-30 AT2G26695 202 / 4e-65 Ran BP2/NZF zinc finger-like superfamily protein (.1) Lus10005288 [exp] 114 / 2e-27 ND / Lus10024456 [exp] 110 / 5e-24 AT5G49880 508 / 2e-170 mitotic checkpoint family protein (.1) Lus10005823 [exp] 86 / 4e-19 ND / Lus10004769 [exp] 84 / 3e-17 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G119600 [exp] 2656 / 0 AT5G51200 2460 / 0.0 EMBRYO DEFECTIVE 3142, Protein of unknown function (DUF3414) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0585 [flax] [poplar] Nucleoporin_A PF11894 [flax] [poplar] Nup192 Nuclear pore complex scaffold, nucleoporins 186/192/205
Representative CDS sequence Show only first row Show all	>Lus10005726 pacid=23175365 polypeptide=Lus10005726 locus=Lus10005726.g ID=Lus10005726.BGIv1.0 annot-version=v1.0 ATGGAAAATCGGGCACAAATGAAGTTTAACTCTCCCAATCAAGACTTCTCACCGGAGTTGAAATGTTTGGGCTATTCAAATTGGCAAGACCAATCTGGTT TTCATGAAGATTCTCAGTTTCATGGCTCAATGAATGGGAATCAAGGTCCCTCCACTTTAAATGAAGATATTGTTAAGCTAATCCAAGAAAATGAAACTCC CTATTGTGGCGATTCCGGTATTCAAGCGGCTCACAATGCAAGGATTGAAGCATCGTTGGGAGAGCTTCAAGAGTCCATCAATTCCATCTCCTTCCAACTC AAAGAAGAGGCGATTCATTTCTTGTCAAGTAGAGTGAGAGTCCTTCATGATGCTTTCTTTGAATTGGAATACAAGACTCAGGCATGGCATGGTGACATTG GAGAAAGAATCAAAGTGGTGGGACAACTTAAAGATGTTGGTGCAATTGATGTGGAGTCTAAAGAGGAGAAGCTAGCCTCGATCTCTCGTGCTACTACTCT AATGAAGATGAGGATATCCTCTCAATCCGAATCCCTCAAACGTGGAAGAGAACCTTGTTTGCCGAATTCCCGCCCTGTTCCTCTGCTTCTCTTCAATGCC GTTTCTCCCTTTGTCTCCTTCATTCCGCTAGGGTTCGCAAAAAATTATCAGCATTTTGAAACTATCTTCCCAATGGTTCCCCCGAGGCAGCTTCTCTCCA CGATTGAATCTTCTCTGCTCGCACCTACGCCGCCGTCACCCACGCAGAGAATCGAGCTCCTCCATGCCATCCGCACCTCTCTGCCTTCCTTTATGTCACT CTTCAGTTATCCGCCACCTAAACAGTCGGACCGTGCCCAAGTGCAGTCCAAGGAAGTTAGATTGCCGGATTCACCGCCAATCTCGCTAGATGACCAGGAC GTGCAAATTGTGTTGAAGTTGAGTGATGATCTTCATCTCAATGAGATAGACTGTGTTCAATTGCTTGTATCTGCCAATCAAGAGTGGGGTTTGATGGGAC GACAACCATTAGAAATATTTCGACTTGCAGCTGGACTTTGGTATACTGAGAGACGAGATCTATTAACAGCTCTCTACACGCTCTTGAGGGCTGTTGTTCT TGATCAGGGCCTAGGCCTACCAGCTGAACTCCTGTCAGAGATCCAAAAGTATATGGAAGATCTTATCAATGGTGGTCTTAGACATCGACTGATTTCTCTC ATAAAGGAACTTAATCGTGAAGAACCAGCTGGTTTAGGTGGACCTCAAAGTGAACCATATGTTCTTGATTCTAGAGGCTCCCTTGTTGAGCGTCGGTCGG TGGTTTGTAGGGAGAGACTGGTTGTTGGACATTGCCTTGTCCTTTCAGTTCTTATTATAAGGGCAGGTTCAAAAGACGTCAAGGATATGTTTCAGGTTTA TAAAGACAGTGCTGCTGATCTTACGGATGACATTAGCACTTTGAAACGTCAGATAGCAGTCAGTGTGTTCTTCGCTCTTGTCATTGCATTTGTCTCAGAT GCCCTAAGTGCAGTTCCTGAAAAAGCATCAGTACTTTCTCGTGACTCTACCTTTAGGAAAGAATTTCAAGAAATAGTGATGTCTTCTGGAAATGATCTAA AGATGGAAGGCTTTATAGGGGGTGTACGGCTTGCGTGGTCTGTACATTTGATGTTAGTGTTTGATGGGAATTCTTCAAGGGAGGCAGCATCAGTTACTGC CTCAAATGATTTAGGATATCTGAATTCTTGCCTGGACTCTGTTTTCTCAAACAATGTTTTCCAGTTTTTAATTGACAACATCCTTGGAACTGCAGCTTAC CAGAATGACGATGAGGATATGGTGTATATGTACAACGCATACCTCCATAAGCTTATCACTTGCTTCTTATCGCATCCACTTGCTAGGGACAAGGTAAAAG ATTCAAAGGACAAAGCCAAGAGTTTGCTTAATTCTTATTGGACGACTGCCCCACACGATCTGACACATGACGGAAGCTATCACTCCCAATCATCTGCCAA CTCCGGAAATGTGCCTTTTGTCTCTCTATTGGAATTTGTCAGTGAGATATATAAGAAGGAGCCTGAGCTGTTGTCTGGTAATGAGACGATATGGACATTT GTGAACTTTGCTGGAGAAGATCATACTAACTTCCAAACACTTGTGGCTTTCTTGAAAATGCTTAGTACTTTGGCTGCAAGTCATGAAGGTGCTGTAAAAG TTTATGAGCTACTTCAAGGCAAAGCATTTCGCTCTGTTGGTTGGAGCACTTTGTTTGATTCCCTGACAATTTATGATGAGAGGTTCAAACAAACCCTTCA GACTGCCGGAACTATGTTACCAGAATTTCCTGAGGGAGATGCTAAAGCACTTGTCGCTTATCTGAATGTTCTTCAGAAGGTTATGGAACATGGACCACCT AATGAAAGGAAGGACTGGTTTCCCGAGATTGAACCACTTTTCAAGCTTCTCGGTTATGAAAATGTGCCACCGTTTTTGAAGGGTGCTCTGCGAGATGCCA TTACTACTTTTTTATTTATTGCTTACACCAATGAATTTGGACGGTGTTGCATGTATGATCTAGACCTTGGAGTTTATGACATGCAATATGAACTGAATGA GGTTGAAGCAAGGAGAGAAAGATATCCTTCAACTATATCATTTCTTAACCTGTTAAATACTCTGATTGCTGAGGAAAAAGATGCAACTGATAGAGGGCGG AGATTCATAGGCATATTCCGGTTCATATATGATCATGTGTTTGGTCCCTTCCCTCTTAGAGCATATGCTGATCCAGTTGAAAAATGGAAATTAGTGATCG CTTGCCTTCAGCATTTTCATATGATGCTGAGCATGTATGACATTCATGATGATGACATTGACAGTATGGTTAGTCAATTGCAGCTTTCAACAGTAACACA AGTATCCCAGCTTCAGATGCAGCTTCCTGTGTTGGAGTTGCTGAAGGACTTCATGAGTGGCAAGACTGTTTTCCGAAACATTATGAGCATTCTTTTGCCA GGAGTCGACTCAATCATCAGTGAACGGACTAGTCAAATACATGGGCATCTACTTGAAAAAGCTGTTCAGCTTTCTTTGGACATTATAATCCTTGTCTTAC AAAAAGATTCGCTTGTTTCTGATTACTGGCGCCCCCTCTATCAGCCTTTGGATGTCGTACTGTCCCAAGATCATAATCAAATAATTGCACTGCTGGAGTA TGTCAGATATGATTTTCTTCTACATATTCAGCAATGTTCTATAAAGATCATGAGTTTTCTTAGTTCTCGCATGGTGGGCCTTGTACAGTTGCTGTTGAAG TCCAATGCGGCAGCTTCTTTGGTTGAGGATTATGCAGCTTGTCTTGAGCAGCGGTCTGAGGAGTGCCAGGTTATAGAAAATAGTGCTGATGATCCTGGGG TCCTTATAATGCAGCTTCTGATTGATAATATTGGCCGGCCTGCTCCAAATATCACACATCTACTTCTTAAGTTTGATGTTAATAGCTCAGTTGACCGGAC AGTTCTTCAGCCAAAGTTTCACTACAGTTGTTTGAAGGTTATTCTTGAAATCTTGGAGGAGCTGACGAAACCTGACATAAATTCTGCGCTTCATGAATTC GGTTTCCAGCATGTTGATACAATTGGTGTTGCTCCACTTCCAAAACGGAATCACAACCAGCCATTACGCATCAGTTCCCTTCACCAGAGAGCTTGGCTGC TGAAGCTTTTAGCCATCGAGTTGCATTCTGGTTATACAGATTTCCCAAGTCATCGAGAAGCATGCCAGAGCATACTTTCTCATATCTTTGGTGGGAACAT AGTTGAGATGGGGTCTGATCATATAATTTCTGATCTTTTACTCCGAAATGGGATTGAACATGTTGGAAACCAGGCAATGAGCAAGAGTAAGGTGTTAGAG TTGCTTGAGGTCGTTCAGTTCCAATCTCCAGATGCCACAGTGAAGCTTTCACAAATAATATCTAATGCAAAGTATGCCTTACTGGCGGAGGACATACTTG GAAATCCTACTACTTCTGTGAAAGGTGGGATTTATTATTATTCTGAGCGTGGTGATCGTCTTATTGACCCGGCCTCCTTCCGAGACAAGCTTTGGCTGAA ATTCAACACTGCATACCCCCATTTGGGTAACCTTGGTAATGAAGCTGAGTTTGAGGATGTAAGAGAGACAATCCAACATTTGTTGAGATGGGGGTGGAAG TACAATAAGAATCTTGAGGAACAAGCTGCACAACTTCATATGTTAACTGGGTGGTCACATGTTGTTGAGGTGTCTGCATCCAGAAGAATGTCCACCTTTG AAAACCGTTCTGAAATTTTATATCAGGTTCTTGATGCCTCGTTGAGTGCATCTGCTTCTCAAGACTGTTCGTTGAGGATGGCATTTGTGTTAAGTCAGGT TGCACTTACTTGTATGGCTAAGCTACGGGACGAAAGGTTTCTCTGTCCTGGTGGCTTGAATTCTGATAGTATCACATGTCTGGATATCATAATGGTGAAA CAATTGCCCAATGGTGCTTGCCACTCCATTTTTTTCAAGCTAATCTTGGCCATTATGAGAACTGAATCATCAGAATCCTTGCGGAGACGCCAGTACGCGT TACTCCTTAGCTATTTTCAGTACTGTCGGCACACTCTTGACCCAGATGTTCCAACAACCGTTCTTCAGTTCTTGTTGCTCGAGGAGCAGGATAACGAAGA TTTAGATCTTCAAAAGATTGATAGAGAGCAGGCTGAACTGGCCCATGTTAATTTCACAATAATAAGGAAAGAAGGTCAGGCCATCTTGGATCTGATAATA AAGGATGCCACCCAAGGAAGTGAACCTGGGAAAACTATCGCTCTTTATGTTCTAGATGCACTGATTTGTATTGATCACGAGAGATATTTCTTAAGTCAAC TTCAGAGCAGGGGATTCTTAAGATCTTGCCTTGTAAACATCAGCAACACTTGCTATCAGGACGGTGGGCATTCACTAGATTCATTACAGCGAGCATGCAC TCTCGAGGCTGAATTTGAATTGCTGTTGAGGATTAGCCAGAAGTATGGGAAGTCTGGGTCTCAAGTGTTATTTTCTATGGGTGCGTTGGAGCACATTACT TCATGCAGGACAGTTACTCTCCAGGGAAGCTTGAGGAGGTTTGACCCTAAGATCAGACGAAATGTTGCTGTAGATGTTGAAAGACAAAGAATGATTGTGA CTCCTATTTTGAGATTGGTGTTTTCACTAACATCATTGATCGATACAGCAGACATTTTTGAGGTGAAGAACAAAATTGTCCGTGAGGTGATAGATTTTGT GAAAGGACACCAATTACTCTTTGATCAAATTCTACATGTCGACGTTCATGAAGCTGATGAGTTGACAATAGAGCAGATCAATCTTGCTGTTGGTATACTT AGCAAGGTCTGGCCTTATGAAGAGAGTGACGAGTTTGGCTTTGTTCAAAGTCTTTTCAGTATGATGTCCGTCCTCTTTTCCCGTGAGTTGGACACCAGTA CCACCGGGAGATCACTGCAATTATCCGAGGATAGGAGGAAGTTTGAATTGAATTTTTTGCACGTCCGCTTCCGTTTGAGTTCTTATTTATATTTCCTTGT CATGAAGAAGTCAGTGAGACTTCAGGTGTCAGACAGCATCGATTACCAAGCTTCTGCTGGTGTGCATCAGCCCACATTACGACTACTTGGGTCACTCCTA AGTTTCATGACAACCTCTATTGAAAAGGCGGCAGACGAGAAGTCCATGTTGCTTAATAAGATTCAGGACGTAAACGAGCTGTCCAGGCAGGAGGTAGATG AGATCATAAACATGTGTGCTCGGCAAAATGTCGTCTCACCTTCTGACGGCATACAGAAAAGGAGATACATTGCGATGGTGGAGATGTGCCAACTTTCTGG CAACCGGGATCAGTCAATAAGATTGTTACTTCCGCTTGCCGAACAAGTGCTAAACATCATTCTAGTTCATTTACAAGAGAACACTTCGACATCCGACACT TTTGGATATCTCAAAGCAATCACATCTGGAAGCAAAGGCAATTATGAAGATGATGATGATGTTCACGATGTGTCTTCATTATGTGGTCAGTTGGTGCCAA CTTTAGAACGGCTCGAGGTACTGAATGAGGATAAAGTAGGACATAACTTGAAGGTCTTCAGCAGATTGGTGACATCGCTCAAAGAAACAGCGATACAGAA ACTGTCATCATAA
AA sequence Show only first row Show all	>Lus10005726 pacid=23175365 polypeptide=Lus10005726 locus=Lus10005726.g ID=Lus10005726.BGIv1.0 annot-version=v1.0 MENRAQMKFNSPNQDFSPELKCLGYSNWQDQSGFHEDSQFHGSMNGNQGPSTLNEDIVKLIQENETPYCGDSGIQAAHNARIEASLGELQESINSISFQL KEEAIHFLSSRVRVLHDAFFELEYKTQAWHGDIGERIKVVGQLKDVGAIDVESKEEKLASISRATTLMKMRISSQSESLKRGREPCLPNSRPVPLLLFNA VSPFVSFIPLGFAKNYQHFETIFPMVPPRQLLSTIESSLLAPTPPSPTQRIELLHAIRTSLPSFMSLFSYPPPKQSDRAQVQSKEVRLPDSPPISLDDQD VQIVLKLSDDLHLNEIDCVQLLVSANQEWGLMGRQPLEIFRLAAGLWYTERRDLLTALYTLLRAVVLDQGLGLPAELLSEIQKYMEDLINGGLRHRLISL IKELNREEPAGLGGPQSEPYVLDSRGSLVERRSVVCRERLVVGHCLVLSVLIIRAGSKDVKDMFQVYKDSAADLTDDISTLKRQIAVSVFFALVIAFVSD ALSAVPEKASVLSRDSTFRKEFQEIVMSSGNDLKMEGFIGGVRLAWSVHLMLVFDGNSSREAASVTASNDLGYLNSCLDSVFSNNVFQFLIDNILGTAAY QNDDEDMVYMYNAYLHKLITCFLSHPLARDKVKDSKDKAKSLLNSYWTTAPHDLTHDGSYHSQSSANSGNVPFVSLLEFVSEIYKKEPELLSGNETIWTF VNFAGEDHTNFQTLVAFLKMLSTLAASHEGAVKVYELLQGKAFRSVGWSTLFDSLTIYDERFKQTLQTAGTMLPEFPEGDAKALVAYLNVLQKVMEHGPP NERKDWFPEIEPLFKLLGYENVPPFLKGALRDAITTFLFIAYTNEFGRCCMYDLDLGVYDMQYELNEVEARRERYPSTISFLNLLNTLIAEEKDATDRGR RFIGIFRFIYDHVFGPFPLRAYADPVEKWKLVIACLQHFHMMLSMYDIHDDDIDSMVSQLQLSTVTQVSQLQMQLPVLELLKDFMSGKTVFRNIMSILLP GVDSIISERTSQIHGHLLEKAVQLSLDIIILVLQKDSLVSDYWRPLYQPLDVVLSQDHNQIIALLEYVRYDFLLHIQQCSIKIMSFLSSRMVGLVQLLLK SNAAASLVEDYAACLEQRSEECQVIENSADDPGVLIMQLLIDNIGRPAPNITHLLLKFDVNSSVDRTVLQPKFHYSCLKVILEILEELTKPDINSALHEF GFQHVDTIGVAPLPKRNHNQPLRISSLHQRAWLLKLLAIELHSGYTDFPSHREACQSILSHIFGGNIVEMGSDHIISDLLLRNGIEHVGNQAMSKSKVLE LLEVVQFQSPDATVKLSQIISNAKYALLAEDILGNPTTSVKGGIYYYSERGDRLIDPASFRDKLWLKFNTAYPHLGNLGNEAEFEDVRETIQHLLRWGWK YNKNLEEQAAQLHMLTGWSHVVEVSASRRMSTFENRSEILYQVLDASLSASASQDCSLRMAFVLSQVALTCMAKLRDERFLCPGGLNSDSITCLDIIMVK QLPNGACHSIFFKLILAIMRTESSESLRRRQYALLLSYFQYCRHTLDPDVPTTVLQFLLLEEQDNEDLDLQKIDREQAELAHVNFTIIRKEGQAILDLII KDATQGSEPGKTIALYVLDALICIDHERYFLSQLQSRGFLRSCLVNISNTCYQDGGHSLDSLQRACTLEAEFELLLRISQKYGKSGSQVLFSMGALEHIT SCRTVTLQGSLRRFDPKIRRNVAVDVERQRMIVTPILRLVFSLTSLIDTADIFEVKNKIVREVIDFVKGHQLLFDQILHVDVHEADELTIEQINLAVGIL SKVWPYEESDEFGFVQSLFSMMSVLFSRELDTSTTGRSLQLSEDRRKFELNFLHVRFRLSSYLYFLVMKKSVRLQVSDSIDYQASAGVHQPTLRLLGSLL SFMTTSIEKAADEKSMLLNKIQDVNELSRQEVDEIINMCARQNVVSPSDGIQKRRYIAMVEMCQLSGNRDQSIRLLLPLAEQVLNIILVHLQENTSTSDT FGYLKAITSGSKGNYEDDDDVHDVSSLCGQLVPTLERLEVLNEDKVGHNLKVFSRLVTSLKETAIQKLSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51200		EMB3142	EMBRYO DEFECTIVE 3142, Protein...		Lus10005726 [exp]	0	1
AT1G26170			ARM repeat superfamily protein...		Lus10031911 [exp]	1.0	0.9706
AT5G47690			binding (.1.2.3)		Lus10038777 [exp]	1.7	0.9642
AT1G64790		ILA	ILITYHIA (.1.2)		Lus10004767 [exp]	3.5	0.9672
AT4G03090			sequence-specific DNA binding;...		Lus10006938 [exp]	3.5	0.9555
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Lus10015946 [exp]	4.1	0.9507
AT2G20000		CDC27b, HBT	HOBBIT, CDC27 family protein ...		Lus10034945 [exp]	4.5	0.9484
AT1G05570		ATGSL6, ATGSL06...	GLUCAN SYNTHASE-LIKE 6, callos...		Lus10013744 [exp]	4.6	0.9597
AT4G38760			Protein of unknown function (D...		Lus10012168 [exp]	4.7	0.9560
AT3G10650		AtNUP1	unknown protein		Lus10034137 [exp]	5.1	0.9542
AT3G46960			RNA helicase, ATP-dependent, S...		Lus10017528 [exp]	5.2	0.9578

Compare expression of checked genes

Lus10005726 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.