Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01080 214 / 3e-67 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036163 [exp] 276 / 2e-90 AT2G01080 267 / 2e-89 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10002100 [exp] 155 / 1e-43 ND / Lus10039500 [exp] 148 / 6e-39 AT1G08315 383 / 2e-129 ARM repeat superfamily protein (.1) Lus10033196 [exp] 139 / 4e-38 ND / Lus10000391 [exp] 117 / 1e-28 AT3G47040 270 / 1e-83 Glycosyl hydrolase family protein (.1.2) Lus10023759 [exp] 107 / 3e-27 ND / Lus10021579 [exp] 98 / 4e-24 ND / Lus10033166 [exp] 99 / 4e-23 AT5G39600 207 / 1e-67 unknown protein Lus10040596 [exp] 95 / 2e-22 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G208000 [exp] 232 / 3e-74 AT2G01080 241 / 2e-80 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.003G021934 [exp] 228 / 9e-73 AT2G01080 249 / 2e-83 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G163800 [exp] 69 / 3e-13 AT2G01080 55 / 6e-09 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10005728 pacid=23175262 polypeptide=Lus10005728 locus=Lus10005728.g ID=Lus10005728.BGIv1.0 annot-version=v1.0 ATGGAGCCACCACTGCGGCAGCGGGACAAGGGAAAGCAGGCACCTCCTATTCCCTCCAATCACCAGCTTAACGGCGGTCCAAAACAACTGCCGCCGGCAG CAGTAGCAATTGAAGGTCCACCTCCTCTGTCTCCAACACCACCGCTTGTTCCTCGACCTCTTCCTCCTCCAAGTAGCACCCAGCATCAACAAAACCACGG TGGAGGACAACACCATCGGCACCAGAACCACCCACAGTACAACCCATACTATCCATCCTCATCCACATCTTCAAAAGCATCCCTGAAGGGGTGCTGTTGC TGCCTGCTCCTCCTCCTGTCTTTCCTCTTACTCCTTGCCCTGGCAATCGCCCTAGTGGTGATCCTCGCTGTGAAGCCCAAGAAGCCCCAATTCGACCTAC AGCAAGTGGGAGTTCAGTACATGGGAATCAACACACCAAGTCCTTCCTCCTTGGACCCGGCGATGGCGTCACTGTCCCTCACGATCCGGATGCTGTTCAA CGCCGTAAACCCTAATAAAGTCGGGATCAAGTACGGGGAGTCAAGGTTCACGGTGATGTACAGAGGGATTCCGTTGGGGAAGGCGTCGGTGGCCGGGTTC TTCCAGGAAGCTCACAGTGAGAGGCAGGTGGTGGCGACGGTGTCTGTGGATCGATACAGCTTGATGCAGGCGGACGCCGCGGATTTGGTGAGGGATGCAT CTTTGAACGACCGGGTAGAGCTGAGGGTTCTCGGTGAAGTCGGGGCCAAGATCCGAGTTATGGACTTGGATTCACCAGGTGTTGAGTCGAGTGCGCCGTT TGAGATTCCCGGACCGATATATGTGGACCCTGATCTGCACTCTGCTGGGAGAGAGCTGACGGTTGATGAGATTTTTGCTAGCCACCCCCCGGATTTGGGC GATGACATTCATACCATCCGAGACGACTCAGACGGAAACGATGAGCAGATCCCGTCGGACGGTGACAGAGATGAGGATAACAGTCGTGATACCTCGTTTA TTGTCTCGCTCGCGGAAGAGACCAGCAAGGAGGGGTACAGGCGCTCCATCAGGATCATGAGCGGGCAGCAGGTCGTCTCATGGATCATAGGGTTCTTCTA CCGTGGCCCTCGACGTGGTAGAGTTGTGTGTTCTATAGGGGTTCAATCTAGCAGCACCGGCGGGGATTGGTTGCTTACTGGTCCAGCACCTGGCGGGCCA CGGATCCCTACTCTGACCCCTAGTTTCGGTGGTCACATAGCCCACCGCCTAGGGTTGGACTCGAGGCCAACATAA
AA sequence Show only first row Show all	>Lus10005728 pacid=23175262 polypeptide=Lus10005728 locus=Lus10005728.g ID=Lus10005728.BGIv1.0 annot-version=v1.0 MEPPLRQRDKGKQAPPIPSNHQLNGGPKQLPPAAVAIEGPPPLSPTPPLVPRPLPPPSSTQHQQNHGGGQHHRHQNHPQYNPYYPSSSTSSKASLKGCCC CLLLLLSFLLLLALAIALVVILAVKPKKPQFDLQQVGVQYMGINTPSPSSLDPAMASLSLTIRMLFNAVNPNKVGIKYGESRFTVMYRGIPLGKASVAGF FQEAHSERQVVATVSVDRYSLMQADAADLVRDASLNDRVELRVLGEVGAKIRVMDLDSPGVESSAPFEIPGPIYVDPDLHSAGRELTVDEIFASHPPDLG DDIHTIRDDSDGNDEQIPSDGDRDEDNSRDTSFIVSLAEETSKEGYRRSIRIMSGQQVVSWIIGFFYRGPRRGRVVCSIGVQSSSTGGDWLLTGPAPGGP RIPTLTPSFGGHIAHRLGLDSRPT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01080			Late embryogenesis abundant (L...		Lus10005728 [exp]	0	1
AT1G77260			S-adenosyl-L-methionine-depend...		Lus10029731 [exp]	9.5	0.8729
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10041646 [exp]	20.2	0.8507
AT1G24340		EMB260, EMB2421	EMBRYO DEFECTIVE 260, EMBRYO D...		Lus10011372 [exp]	36.7	0.8547
AT2G47710			Adenine nucleotide alpha hydro...		Lus10007043 [exp]	39.7	0.8734
AT2G47710			Adenine nucleotide alpha hydro...		Lus10006703 [exp]	44.5	0.8758
AT2G35658			unknown protein		Lus10011000 [exp]	58.0	0.8274
AT3G54110		ATUCP1, UCP1, U...	ARABIDOPSIS THALIANA UNCOUPLIN...		Lus10021123 [exp]	59.5	0.8548
AT2G03800		GEK1	GEKO1, D-aminoacyl-tRNA deacyl...		Lus10036828 [exp]	68.6	0.8634
AT5G62750			unknown protein		Lus10042178 [exp]	69.1	0.8664
AT3G58490		AtSPP1	sphingoid phosphate phosphatas...		Lus10015975 [exp]	81.6	0.8597

Compare expression of checked genes

Lus10005728 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.