Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14110 275 / 4e-95 FUS7, EMB143, CSN8, COP9 FUSCA 7, EMBRYO DEFECTIVE 143, COP9 SIGNALOSOME SUBUNIT 8, CONSTITUTIVE PHOTOMORPHOGENIC 9, COP9 signalosome, subunit CSN8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036164 [exp] 389 / 3e-140 AT4G14110 284 / 7e-99 FUSCA 7, EMBRYO DEFECTIVE 143, COP9 SIGNALOSOME SUBUNIT 8, CONSTITUTIVE PHOTOMORPHOGENIC 9, COP9 signalosome, subunit CSN8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G207900 [exp] 306 / 2e-107 AT4G14110 299 / 2e-104 FUSCA 7, EMBRYO DEFECTIVE 143, COP9 SIGNALOSOME SUBUNIT 8, CONSTITUTIVE PHOTOMORPHOGENIC 9, COP9 signalosome, subunit CSN8 (.1) Potri.003G022001 [exp] 110 / 1e-31 AT4G14110 111 / 2e-32 FUSCA 7, EMBRYO DEFECTIVE 143, COP9 SIGNALOSOME SUBUNIT 8, CONSTITUTIVE PHOTOMORPHOGENIC 9, COP9 signalosome, subunit CSN8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF10075 [flax] [poplar] CSN8_PSD8_EIF3K CSN8/PSMD8/EIF3K family
Representative CDS sequence Show only first row Show all	>Lus10005729 pacid=23175253 polypeptide=Lus10005729 locus=Lus10005729.g ID=Lus10005729.BGIv1.0 annot-version=v1.0 ATGGATTTCACTCCTCTCAGCAACGCCCTAGGATCTAAATCATACGGAAATATTGCTGATATCTGCGATGAACTCATAGTCAAGGCAGCAGCTGAAGGAG TTCCCTTCCAGGACGACTGGCCCTATGCGATTCATCTTCTCGGTTATATTTACCTTAATGATGTTAACAGTGCACGTTTTCTGTGGAAAACAATCCCTTC CGTGGTGAAAGATAGCCAGCCTGAAGTGGTTTCTGTTTGGGCAATTGGTCAGAAACTGTGGACAAATGCCTATCCGGATGTGCACGAGGCTGTGCGCAGT TTTGATTGGAGCGAACAAACTCGCCCCCTTGTTGCTGCTTTTGCTGAACTGTATAGCGAGAGGATGTTTAAGTTGTTGTTATCAGCTTATTCAACTATTA GCGTCCAAGACACTGCTCTTTTTTTGGGGATGAATGAGGAAGATGCCACAAATTATGTAGTGCAACAAGGATGGAGTCTTGATTCGGATTCTCAGATGCT GACTGTGAAGAAGACTGTGAAGAAGCAGCCTGCTGCAATGGAGCAGAAACGGGATCCGAGTAAGTTACAGCGCTTGACAGAGTATGTGTTCCACCTTGAG CACTAA
AA sequence Show only first row Show all	>Lus10005729 pacid=23175253 polypeptide=Lus10005729 locus=Lus10005729.g ID=Lus10005729.BGIv1.0 annot-version=v1.0 MDFTPLSNALGSKSYGNIADICDELIVKAAAEGVPFQDDWPYAIHLLGYIYLNDVNSARFLWKTIPSVVKDSQPEVVSVWAIGQKLWTNAYPDVHEAVRS FDWSEQTRPLVAAFAELYSERMFKLLLSAYSTISVQDTALFLGMNEEDATNYVVQQGWSLDSDSQMLTVKKTVKKQPAAMEQKRDPSKLQRLTEYVFHLE H

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14110		FUS7, EMB143, C...	FUSCA 7, EMBRYO DEFECTIVE 143,...		Lus10005729 [exp]	0	1
AT4G14110		FUS7, EMB143, C...	FUSCA 7, EMBRYO DEFECTIVE 143,...		Lus10036164 [exp]	3.2	0.9047
AT5G41010		NRPE12, NRPD12,...	DNA directed RNA polymerase, 7...		Lus10030353 [exp]	5.5	0.8393
AT4G17010			unknown protein		Lus10001160 [exp]	5.7	0.8858
AT2G26990		COP12, ATCSN2, ...	FUSCA 12, CONSTITUTIVE PHOTOMO...		Lus10037417 [exp]	6.5	0.8960
AT5G52200		AtI-2	inhibitor-2, phosphoprotein ph...		Lus10005751 [exp]	6.9	0.8391
AT1G03330			Small nuclear ribonucleoprotei...		Lus10042686 [exp]	7.5	0.8871
AT4G21800		QQT2	quatre-quart2, P-loop containi...		Lus10040022 [exp]	7.7	0.8691
AT3G59800			unknown protein		Lus10008338 [exp]	10.4	0.8331
AT5G59140			BTB/POZ domain-containing prot...		Lus10040746 [exp]	11.8	0.8719
AT4G21800		QQT2	quatre-quart2, P-loop containi...		Lus10019602 [exp]	12.6	0.8482

Compare expression of checked genes

Lus10005729 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.