Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036165 [exp] 412 / 2e-146 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G176900 [exp] 92 / 2e-21 AT1G66810 48 / 4e-06 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.002G084750 [exp] 69 / 3e-13 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005731 pacid=23175263 polypeptide=Lus10005731 locus=Lus10005731.g ID=Lus10005731.BGIv1.0 annot-version=v1.0 ATGGATTCGCCGATAATTCGTAACCGTCGTAGCGCGGCTGCCGCCGCCAGGTCTCAGACTATTCTATCTCAGCATGATTTCGACGGAGTTGATGCTGGAG ATGTCTTTTGCTCTCCTTCGCCTATGACTAAGAACAGCCAATTCAGCAGCTCCCCCGGACGCAACAACCGCGGCGTCACCAGCGTTGGTAGATCGTGGTC TTCGCTTTCTTCTTTAGAGAACGTAATTAAGTCATCGGTGCTCTCTGCCGCTATATTGAAGGTGATGGAGGACGATGTGTTGGTGATGGATGAGATCGGT GTGGTACCAGCTTTCGGAGTTGCTAGGGTTTCTAGTAAGACGCGTGTGTTATCGGAGTCTAGTGGATCGTCGTCAAACAGCTCCTCCTCTCCTTCGCCCG GGAACAGAATTAACAAGACTGAACTCTGTAGGGCTTGGGTGGATCATGAATACTGCCGCTGCGGGACTAAATGCCAGGTTCGAAGTTACAGGTCACTGAC TCCACCATCATACCCTAGAAACACAAAATCCCTCCTCGTTTCTCCAGAAGGTACAGGAAGCGGAAGAAGATTTGCTGCTGATGCCAAGAAGGCCATTTTC ATGAAATCAGAATTGTCAAGCAAGAAGACAACGAGCAGTGCAGTGTTGGAATATAAGGCCATTAATCCCACCCTAATCGCCAATGGAAGCTCAACACCTA TTAACAAACCTAAAGGCTTCGGGAACAGAAGTACCATACAGATCAGCTCATCCAATTGGTCACCCTTGGATGATAACATTGAAATCATCCTGCCACTCCA TACTGAGAAAGGCAGCTCAAGGGAACATATTGATGCCTATATCAACCGTATACTTCATGGACCCAGTACAAGGAAAAGGTTACCTGTGTTCGGTGAGTTG TGCCCGTAG
AA sequence Show only first row Show all	>Lus10005731 pacid=23175263 polypeptide=Lus10005731 locus=Lus10005731.g ID=Lus10005731.BGIv1.0 annot-version=v1.0 MDSPIIRNRRSAAAAARSQTILSQHDFDGVDAGDVFCSPSPMTKNSQFSSSPGRNNRGVTSVGRSWSSLSSLENVIKSSVLSAAILKVMEDDVLVMDEIG VVPAFGVARVSSKTRVLSESSGSSSNSSSSPSPGNRINKTELCRAWVDHEYCRCGTKCQVRSYRSLTPPSYPRNTKSLLVSPEGTGSGRRFAADAKKAIF MKSELSSKKTTSSAVLEYKAINPTLIANGSSTPINKPKGFGNRSTIQISSSNWSPLDDNIEIILPLHTEKGSSREHIDAYINRILHGPSTRKRLPVFGEL CP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10005731 [exp]	0	1
AT4G05390		ATRFNR1	root FNR 1 (.1.2)		Lus10023266 [exp]	12.7	0.9106
AT3G21865		PEX22	peroxin 22 (.1)		Lus10027155 [exp]	13.7	0.9038
AT1G03910			unknown protein		Lus10021530 [exp]	18.5	0.9076
AT3G19080			SWIB complex BAF60b domain-con...		Lus10009333 [exp]	28.5	0.9026
AT3G52190		AtPHF1, PHF1	phosphate transporter traffic ...		Lus10038651 [exp]	31.8	0.8859
AT4G39230			NmrA-like negative transcripti...		Lus10026350 [exp]	38.3	0.8642
AT3G57090		FIS1A, BIGYIN	FISSION 1A, Tetratricopeptide ...		Lus10036023 [exp]	48.4	0.8931
AT5G20350		TIP1	TIP GROWTH DEFECTIVE 1, Ankyri...		Lus10008037 [exp]	48.5	0.8658
AT3G63010		ATGID1B, GID1B	GA INSENSITIVE DWARF1B, alpha/...		Lus10008189 [exp]	50.0	0.8932
AT3G51660			Tautomerase/MIF superfamily pr...		Lus10000344 [exp]	52.0	0.8926

Compare expression of checked genes

Lus10005731 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.