Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01070 635 / 0 Lung seven transmembrane receptor family protein (.1.2) AT1G72480 499 / 3e-173 Lung seven transmembrane receptor family protein (.1) AT1G61670 451 / 1e-154 Lung seven transmembrane receptor family protein (.1) AT1G10980 307 / 1e-98 Lung seven transmembrane receptor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036166 [exp] 948 / 0 AT2G01070 679 / 0.0 Lung seven transmembrane receptor family protein (.1.2) Lus10008125 [exp] 527 / 0 AT1G72480 719 / 0.0 Lung seven transmembrane receptor family protein (.1) Lus10013162 [exp] 522 / 0 AT1G72480 715 / 0.0 Lung seven transmembrane receptor family protein (.1) Lus10030521 [exp] 460 / 1e-157 AT1G61670 612 / 0.0 Lung seven transmembrane receptor family protein (.1) Lus10012872 [exp] 456 / 2e-156 AT1G61670 604 / 0.0 Lung seven transmembrane receptor family protein (.1) Lus10025135 [exp] 292 / 1e-93 AT1G61670 441 / 4e-152 Lung seven transmembrane receptor family protein (.1) Lus10025219 [exp] 214 / 9e-67 AT1G61670 308 / 6e-104 Lung seven transmembrane receptor family protein (.1) Lus10025218 [exp] 179 / 1e-52 AT1G61670 303 / 2e-101 Lung seven transmembrane receptor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G209400 [exp] 625 / 0 AT2G01070 650 / 0.0 Lung seven transmembrane receptor family protein (.1.2) Potri.003G068500 [exp] 534 / 0 AT1G72480 747 / 0.0 Lung seven transmembrane receptor family protein (.1) Potri.001G166500 [exp] 528 / 0 AT1G72480 738 / 0.0 Lung seven transmembrane receptor family protein (.1) Potri.006G109000 [exp] 468 / 2e-161 AT1G61670 691 / 0.0 Lung seven transmembrane receptor family protein (.1) Potri.016G137700 [exp] 456 / 2e-156 AT1G61670 683 / 0.0 Lung seven transmembrane receptor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0192 [flax] [poplar] GPCR_A PF06814 [flax] [poplar] Lung_7-TM_R Lung seven transmembrane receptor
Representative CDS sequence Show only first row Show all	>Lus10005732 pacid=23175258 polypeptide=Lus10005732 locus=Lus10005732.g ID=Lus10005732.BGIv1.0 annot-version=v1.0 ATGGAGATAACTCACCGAAGTCTCCTCCTTATCCTCCTCTTTCTTAACCATTATTTCCTTTTAGCCTCCTCCTCCATTCACATCTATAACGCTCAACCCT TCACCGAAGTTGGAAATGCTTTCCTTCTCTCTGGAGGCAGCGAAGGCATTGTCGCCTCCACCGCCGCTTCTGCTCTTCCTCCTTACACTGTTGACTCTTC TTCCTACGCTATCCCGCGCTCTATCCGCGATGGCCGTTCCTACATCCGGTTTGAGAATGTCACCTTCTGGAGGTCAAAGGCTGCAGCTGATGAGGATCCA GATATGGATCATGATACAGGACTTGTTCAAGTTGTCATGTTTGAGGCTGCTGATCGAAATAGTATTGGTGGTTCTGCTTATGGCGGACAGAGATCAATCT GTTGCACACCTGACCTTGCTAAGCTCGAAGGTTGCAAAGAAGGTCAAGTGATTAGGATACCTTCTGGAACGGATATTAACTGGCCAATAGTTTTAAATGT CAACTTCAGAGGCGATGACTTGTCTACAAAACTAAATGATGAAGATGTGTACATTACCAAAACTGGGATGTATAACTTGTTTTTCGTTGCATGTGATCCA AGGCTCAAGGGACTTGTAATGAGTGGGAAGACAATTTGGAAGAACTCGGATGGTTATTTGCCTGGTAGGATGGCCCCTCTTAGGAATTTTTATGTTCTCA TGTCTGTTGCATATGTGTTGCTTAGCTTGATATGGTTCACCCAGTACTTGAGGTTTTGGAAAGATATACTGCAACTTCAGCATTGTATCACTGCTGTTAT AGCTTTAGGATTATTTGAGATGGTTCTTTGGTATGCAGAGTATGTGAACTTTAACACCTTAGGTATCAGGCCTGTTGCAATCACTACATGGGTTGTGACG ATTGGAGATGTAAGGAAAACAGTTTCTCATCTACTTCTACTCTCTGTTTCGATGGGCTACGGTGTTGTGCGCCCCACTCTTGGTGGTCTTACCTCGAAGG TGCTTCTTCTAGGGATGACTTACTTTTTGGCGTCAGAATTGCTTGATATCACCGAATATGTCGGGACCATTAATGACGTATCTGGAAGAGCAAGGTTACT TTTAGTACTCCCTGCAGCGTTCCTCGATGCATTTTTTATATTGTGGATATTTAAATCTCTTCAGAAGACATTAGAACAGTTGCAGTCAAAAAGGAGCTCT GTCAAGTTGGATATCTATAGGAAATTCTCAAATGCACTAGCGGTATCAGTTATTGCATCTGTTGTGTGGATAGTTTACGAGGTTTACATCAAAGCAACGG ACCCATTCAATGAGCGGTGGCAAAGTGCATGGATTATCACTGCTTTCTGGGACCTTCTTACTTATGTACTGCTCTGTGTCATCTGCTATCTCTGGGCTCC ATCTTTAAATTCTCAAAGGTATGCTTACTCAGAAGAGTTAGGTGATGAAGATTTTGATTACGAAACCCAGTCTCTGACGACGGGGAAGCCGGATGGCGAT ATTAGTTTAGTAGTAAGAAATGGTGGTGCCAACGGTACTTTTGATGATGAAGAAGAAGATGTAATAGAAGAAGACAAGAGAGAATGA
AA sequence Show only first row Show all	>Lus10005732 pacid=23175258 polypeptide=Lus10005732 locus=Lus10005732.g ID=Lus10005732.BGIv1.0 annot-version=v1.0 MEITHRSLLLILLFLNHYFLLASSSIHIYNAQPFTEVGNAFLLSGGSEGIVASTAASALPPYTVDSSSYAIPRSIRDGRSYIRFENVTFWRSKAAADEDP DMDHDTGLVQVVMFEAADRNSIGGSAYGGQRSICCTPDLAKLEGCKEGQVIRIPSGTDINWPIVLNVNFRGDDLSTKLNDEDVYITKTGMYNLFFVACDP RLKGLVMSGKTIWKNSDGYLPGRMAPLRNFYVLMSVAYVLLSLIWFTQYLRFWKDILQLQHCITAVIALGLFEMVLWYAEYVNFNTLGIRPVAITTWVVT IGDVRKTVSHLLLLSVSMGYGVVRPTLGGLTSKVLLLGMTYFLASELLDITEYVGTINDVSGRARLLLVLPAAFLDAFFILWIFKSLQKTLEQLQSKRSS VKLDIYRKFSNALAVSVIASVVWIVYEVYIKATDPFNERWQSAWIITAFWDLLTYVLLCVICYLWAPSLNSQRYAYSEELGDEDFDYETQSLTTGKPDGD ISLVVRNGGANGTFDDEEEDVIEEDKRE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01070			Lung seven transmembrane recep...		Lus10005732 [exp]	0	1
AT1G79820		SGB1	SUPPRESSOR OF G PROTEIN BETA1,...		Lus10025800 [exp]	1.0	0.9447
AT3G06550		RWA2	REDUCED WALL ACETYLATION 2, O-...		Lus10017079 [exp]	2.0	0.9302
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10012162 [exp]	2.4	0.9446
AT1G13180		ATARP3, DIS1	DISTORTED TRICHOMES 1, ARABIDO...		Lus10006238 [exp]	4.7	0.9180
AT3G53520		ATUXS1, UXS1	UDP-glucuronic acid decarboxyl...		Lus10025293 [exp]	6.7	0.9315
AT5G46340		RWA1	REDUCED WALL ACETYLATION 1, O-...		Lus10037795 [exp]	6.7	0.9189
AT3G03690		UNE7	unfertilized embryo sac 7, Cor...		Lus10005676 [exp]	8.1	0.9268
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Lus10003270 [exp]	8.4	0.9224
AT2G01070			Lung seven transmembrane recep...		Lus10036166 [exp]	9.2	0.9111
AT1G29470			S-adenosyl-L-methionine-depend...		Lus10018954 [exp]	11.7	0.8883

Compare expression of checked genes

Lus10005732 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.