Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24580 342 / 1e-110 REN1 ROP1 ENHANCER 1, Rho GTPase activation protein (RhoGAP) with PH domain (.1) AT5G19390 289 / 2e-92 Rho GTPase activation protein (RhoGAP) with PH domain (.1), Rho GTPase activation protein (RhoGAP) with PH domain (.2), Rho GTPase activation protein (RhoGAP) with PH domain (.3), Rho GTPase activation protein (RhoGAP) with PH domain (.4) AT5G12150 269 / 3e-84 Rho GTPase activation protein (RhoGAP) with PH domain (.1), Rho GTPase activation protein (RhoGAP) with PH domain (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036167 [exp] 475 / 1e-162 AT4G24580 697 / 0.0 ROP1 ENHANCER 1, Rho GTPase activation protein (RhoGAP) with PH domain (.1) Lus10036048 [exp] 227 / 7e-74 AT5G19390 414 / 3e-142 Rho GTPase activation protein (RhoGAP) with PH domain (.1), Rho GTPase activation protein (RhoGAP) with PH domain (.2), Rho GTPase activation protein (RhoGAP) with PH domain (.3), Rho GTPase activation protein (RhoGAP) with PH domain (.4) Lus10036047 [exp] 61 / 5e-10 AT5G19390 635 / 0.0 Rho GTPase activation protein (RhoGAP) with PH domain (.1), Rho GTPase activation protein (RhoGAP) with PH domain (.2), Rho GTPase activation protein (RhoGAP) with PH domain (.3), Rho GTPase activation protein (RhoGAP) with PH domain (.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G157400 [exp] 350 / 7e-114 AT4G24580 786 / 0.0 ROP1 ENHANCER 1, Rho GTPase activation protein (RhoGAP) with PH domain (.1) Potri.002G104300 [exp] 345 / 4e-112 AT4G24580 793 / 0.0 ROP1 ENHANCER 1, Rho GTPase activation protein (RhoGAP) with PH domain (.1) Potri.001G275200 [exp] 302 / 6e-96 AT5G19390 1080 / 0.0 Rho GTPase activation protein (RhoGAP) with PH domain (.1), Rho GTPase activation protein (RhoGAP) with PH domain (.2), Rho GTPase activation protein (RhoGAP) with PH domain (.3), Rho GTPase activation protein (RhoGAP) with PH domain (.4) Potri.009G069700 [exp] 300 / 3e-95 AT5G19390 1060 / 0.0 Rho GTPase activation protein (RhoGAP) with PH domain (.1), Rho GTPase activation protein (RhoGAP) with PH domain (.2), Rho GTPase activation protein (RhoGAP) with PH domain (.3), Rho GTPase activation protein (RhoGAP) with PH domain (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0409 [flax] [poplar] GAP PF00620 [flax] [poplar] RhoGAP RhoGAP domain
Representative CDS sequence Show only first row Show all	>Lus10005733 pacid=23175257 polypeptide=Lus10005733 locus=Lus10005733.g ID=Lus10005733.BGIv1.0 annot-version=v1.0 ATGGCGCTGCTATTCCAGCCTCCTTATCAGCAGGAGGGGGAGGAGGAGCAGCAACAGGAGGAAAGAATGATAATCAGCCTTCTCGCGGCACCAATCCATG TGGTTATCAAGGCTGACAAAAAGCTATTAACAGTACTCTTTCCAGATGGTCGTGATGGACGAGCTTTCACTCTCAAGGCTGAAACGTCAGAAGATTTGTT TGAGTGGAAAAATGCTCTTGAGAGTGCTTTGACACAAGCACCTTGTACTGGTAATGTGATGGGACAAAATGTGATGGGACAAAATGGTGTCATCAGGAAT GATCAACCTGAAGCTGCTGATACAAAAGTAGAGAGGCCGGTAGTGAATGATAAGCCTCCTCCAGTATCTTTGGTACTTGGAAGACCGATTCTTCTTGCTT TGGAAGACGTTGACGGATGTCCGTCTTTTCTGGAAAAGGCTCTTAAGTTTATTGAAGAACATGGGAAGATAGAATTCTCTCTTGGGGAGGATGCACATGT AGTTGGTGATTGTATTAAGTACTTTTTACGGGAACTGCCGTCATCTCCAGTACCTGCATCTTGTTGTCATGCGTTACTAGATGCATGTAGAAGTGGCAAT AGAGTTGCTTCCATGAGAACAGCAATAATGGAAACATTTCCCGAGCCAAACCGTCGCTTGCTGCAGAGAATTCTTGTGATGATGCAACAAGTGGCTTCTC ATAAAGAACGAAACAGAATGAGCATTTCAGCGGTGTCGGCTTGCATGGCACCATTACTTCTCCGTCCTCTTCTGTCAGGTGATTGTGAGATAGAAAGTGA TTTTGACGTCGGTGGAGATGGTTCAATGCAACTTCTCCAAGCTGCTGCGGCCGCTAATCATGCTCAAGCCATTGTTATAACCCTAATGGAAGAGTATGAA AGTATATTCAGTGTAAGATTCCTTCGTTATCTATTTTGA
AA sequence Show only first row Show all	>Lus10005733 pacid=23175257 polypeptide=Lus10005733 locus=Lus10005733.g ID=Lus10005733.BGIv1.0 annot-version=v1.0 MALLFQPPYQQEGEEEQQQEERMIISLLAAPIHVVIKADKKLLTVLFPDGRDGRAFTLKAETSEDLFEWKNALESALTQAPCTGNVMGQNVMGQNGVIRN DQPEAADTKVERPVVNDKPPPVSLVLGRPILLALEDVDGCPSFLEKALKFIEEHGKIEFSLGEDAHVVGDCIKYFLRELPSSPVPASCCHALLDACRSGN RVASMRTAIMETFPEPNRRLLQRILVMMQQVASHKERNRMSISAVSACMAPLLLRPLLSGDCEIESDFDVGGDGSMQLLQAAAAANHAQAIVITLMEEYE SIFSVRFLRYLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24580		REN1	ROP1 ENHANCER 1, Rho GTPase ac...		Lus10005733 [exp]	0	1
					Lus10027457 [exp]	1.0	0.9962
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10024186 [exp]	1.7	0.9641
					Lus10014650 [exp]	3.5	0.9769
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10003585 [exp]	5.7	0.9572
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10003345 [exp]	6.3	0.9572
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Lus10013268 [exp]	6.9	0.9572
AT3G05950			RmlC-like cupins superfamily p...		Lus10035280 [exp]	7.5	0.9572
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10038796 [exp]	7.9	0.6318
AT3G04380		SDG31, SUVR4	SET DOMAIN PROTEIN 31, SET-dom...		Lus10005476 [exp]	8.0	0.9414
AT3G50830		ATCOR413-PM2, C...	cold-regulated 413-plasma memb...		Lus10016782 [exp]	8.3	0.7095

Compare expression of checked genes

Lus10005733 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.