Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64110 194 / 3e-54 DAA1 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT4G28000 177 / 2e-48 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G52882 166 / 2e-44 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G24860 84 / 6e-17 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G62130 76 / 1e-14 AAA-type ATPase family protein (.1) AT4G02480 72 / 3e-13 AAA-type ATPase family protein (.1) AT1G02890 71 / 1e-12 AAA-type ATPase family protein (.1.2) AT3G19740 46 / 5e-05 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G50140 45 / 0.0001 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017535 [exp] 225 / 1e-65 AT1G64110 1157 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10028752 [exp] 224 / 5e-65 AT1G64110 1165 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10027550 [exp] 156 / 3e-45 AT5G52882 229 / 1e-70 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10027551 [exp] 156 / 4e-41 AT5G52882 1136 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10039309 [exp] 153 / 5e-40 AT5G52882 1140 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10010282 [exp] 71 / 9e-13 AT4G02480 1408 / 0.0 AAA-type ATPase family protein (.1) Lus10036347 [exp] 70 / 2e-12 AT4G02480 1395 / 0.0 AAA-type ATPase family protein (.1) Lus10013429 [exp] 56 / 7e-08 AT1G50140 1151 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10040976 [exp] 52 / 1e-06 AT3G19740 472 / 2e-154 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G097600 [exp] 188 / 3e-52 AT1G64110 1159 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.003G133700 [exp] 188 / 3e-52 AT1G64110 1145 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.015G026900 [exp] 182 / 3e-50 AT5G52882 1146 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G035400 [exp] 180 / 2e-49 AT5G52882 1137 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G094100 [exp] 95 / 1e-20 AT4G02480 1128 / 0.0 AAA-type ATPase family protein (.1) Potri.012G096300 [exp] 94 / 2e-20 AT4G02480 1153 / 0.0 AAA-type ATPase family protein (.1) Potri.014G131000 [exp] 76 / 3e-14 AT1G02890 1432 / 0.0 AAA-type ATPase family protein (.1.2) Potri.002G205900 [exp] 72 / 4e-13 AT1G02890 1445 / 0.0 AAA-type ATPase family protein (.1.2) Potri.007G069800 [exp] 57 / 2e-08 AT1G50140 1215 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G093300 [exp] 56 / 3e-08 AT3G19740 1209 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005736 pacid=23175261 polypeptide=Lus10005736 locus=Lus10005736.g ID=Lus10005736.BGIv1.0 annot-version=v1.0 ATGGAGCAGAAGCAGTTTCTGTGGTCGACTTTGGGAGTCGTCGTCGGAGTAGGAGTGGGGCTTGGGTTGGCGTCGCCGACGGTGAGCAAATGGACCGGCG TCAGTTCGTCGTCGAACGCCGTGACAGGAGACAAATTGGAGCAGGAACTCGCGAGGCAAGTGATTGACGGAAGAGAAGCTGGGGTCACTTTCGCCGAATT CCCTTACTACCTCAGTGATCAGACCAAAGTATTGCTGACGAGTGCGGCGTATGTGCACTTGAAGCACGCCGAAGTTTCAACATACACAAGGAATCTTTCA CCAGCTAGTCGAACTATACTGCTCTCCGGCCCTGCAGAACTCTACCAGCAAATGCTTGCCAAAGCTCTAGCTCATTATTTCGATGCCAAGCTGCTGCTAC TAGATGTAACCGATTTTTCTCTCAAGGTAAGCGAGTCAGATGAGCATTTCAGTGTTGTTTGGTGCTGCTTGTTTACAAATTTTAGCTTGTTTGGTACAGA TTCAGAGCAAGTACGGCACAAGCAAGGACTCTCAAGTCCACTTCAATGGAGAGGCTGTCGGATTTCCTGGGTTCTTTTTCCATACTGCAGCAGGATAAGG AACCCAAAGATTCTGGTACAAAATGAGTACCGAGAGGCGGATGAAAAGCTTACTTTGCTGTTCCCATATAACGTTGAGATCCCGGCACCTGAAGATGAAA ACCAGCATATCAATTGGAAGTCCCAGCTGGAGGAGGATATGAAGATGATCCAGGTTCAAGATAATAGGAACCATATTGTGGAAGTCCTTTTGGCTAATGA CCTCAACTGTGATGATCTGGATACTATCTGTATGGCAGACACAATGGAAAGCAAGTCTGTTGGAAAAGTTATTTTGAAGTTGGAAGCTCAGGCTGAACTT CCCAAGAAAGAAGGGAGTGAACCTGCAGCTAATGCGAAGCCAGAAGCAAAAGCTGAAGCCGAAATTCCTGAAAAGAAGGATGAATCAGGGACACCAGCAG CTGTTAAACCAGAGGCTGCAAAGGCTCCAGAGGTTCTTTCGGACAACGAATTTGAGAAGCGCATAAGACCAGAAGTCATACCAGCAGATGAGATCAATGA GATTCAACGACATTGGTTCTCCCGAGGAAATCAAGGAATCACTTCAGGAACTAGTCATGCTACCTCTCAGACGACCCGACTTATTCAAGGGTGGACTCCT AAAGCCATGCAGGGGAATTCTGCTATTTGTGATGGATTATCCTTACTTCGGAGACAACTTGATGGAAAAGTCGAGGTCTCCAAAGATCCATTGCATCTTT TTCCAATATTCTTTGTGATGGATGATATTCTTTGTGATGGATTGTAG
AA sequence Show only first row Show all	>Lus10005736 pacid=23175261 polypeptide=Lus10005736 locus=Lus10005736.g ID=Lus10005736.BGIv1.0 annot-version=v1.0 MEQKQFLWSTLGVVVGVGVGLGLASPTVSKWTGVSSSSNAVTGDKLEQELARQVIDGREAGVTFAEFPYYLSDQTKVLLTSAAYVHLKHAEVSTYTRNLS PASRTILLSGPAELYQQMLAKALAHYFDAKLLLLDVTDFSLKVSESDEHFSVVWCCLFTNFSLFGTDSEQVRHKQGLSSPLQWRGCRISWVLFPYCSRIR NPKILVQNEYREADEKLTLLFPYNVEIPAPEDENQHINWKSQLEEDMKMIQVQDNRNHIVEVLLANDLNCDDLDTICMADTMESKSVGKVILKLEAQAEL PKKEGSEPAANAKPEAKAEAEIPEKKDESGTPAAVKPEAAKAPEVLSDNEFEKRIRPEVIPADEINEIQRHWFSRGNQGITSGTSHATSQTTRLIQGWTP KAMQGNSAICDGLSLLRRQLDGKVEVSKDPLHLFPIFFVMDDILCDGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28000			P-loop containing nucleoside t...		Lus10005736 [exp]	0	1
AT1G02460			Pectin lyase-like superfamily ...		Lus10038059 [exp]	8.5	0.9219
AT1G80530			Major facilitator superfamily ...		Lus10017480 [exp]	9.9	0.9286
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Lus10011430 [exp]	16.5	0.9224
AT3G19990			unknown protein		Lus10028680 [exp]	23.2	0.9170
AT2G01830		CRE1, AHK4, WOL...	WOODEN LEG 1, WOODEN LEG, CYTO...		Lus10028992 [exp]	28.8	0.9162
AT1G63940		MDAR6	monodehydroascorbate reductase...		Lus10028763 [exp]	33.0	0.9078
AT2G24400			SAUR-like auxin-responsive pro...		Lus10035716 [exp]	34.1	0.9104
AT5G54370			Late embryogenesis abundant (L...		Lus10017577 [exp]	34.3	0.9135
AT3G54250			GHMP kinase family protein (.1...		Lus10034147 [exp]	34.4	0.9144
AT3G01516			unknown protein		Lus10014544 [exp]	35.7	0.9085

Compare expression of checked genes

Lus10005736 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.