Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13410 157 / 3e-45 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G06150 160 / 1e-44 bHLH bHLH089, EMB1444 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT4G18840 153 / 3e-43 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G62260 153 / 1e-42 MEF9 mitochondrial editing factor 9 (.1) AT1G09410 151 / 8e-42 pentatricopeptide (PPR) repeat-containing protein (.1) AT3G29230 150 / 1e-41 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G44880 149 / 1e-41 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G74630 147 / 1e-40 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G15930 145 / 8e-40 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G02750 145 / 9e-40 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027455 [exp] 379 / 2e-130 AT3G29230 324 / 4e-102 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039974 [exp] 168 / 1e-48 AT1G06150 612 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10008825 [exp] 168 / 2e-48 AT1G06150 614 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10003422 [exp] 164 / 5e-47 AT2G44880 679 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10041097 [exp] 159 / 5e-45 AT5G66520 367 / 2e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014113 [exp] 157 / 3e-44 AT3G29230 767 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031423 [exp] 157 / 5e-44 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 157 / 7e-44 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002288 [exp] 155 / 1e-43 AT1G31430 689 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G140400 [exp] 298 / 1e-98 AT3G29230 398 / 2e-132 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G046200 [exp] 174 / 1e-50 AT2G44880 676 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.017G086100 [exp] 173 / 1e-50 AT5G15300 675 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.008G121400 [exp] 166 / 7e-48 AT1G13410 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G258766 [exp] 165 / 1e-47 AT1G06150 705 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.003G087100 [exp] 159 / 4e-45 AT3G29230 368 / 1e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G072500 [exp] 158 / 6e-45 AT3G21470 565 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G035900 [exp] 157 / 2e-44 AT1G74630 884 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G265200 [exp] 156 / 2e-44 AT3G29230 364 / 9e-120 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G139200 [exp] 155 / 1e-43 AT1G62260 749 / 0.0 mitochondrial editing factor 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10005741 pacid=23169839 polypeptide=Lus10005741 locus=Lus10005741.g ID=Lus10005741.BGIv1.0 annot-version=v1.0 ATGCCTGAAAGACTTGTGGAAGTTTGTAACCGGCTGATAACCGAGTGCGTAAACTCTGGAGATGTCAGGTCTGCTAGAGAGTTGTTTGATGAAATGAAAG AGAGAGACGTCATTTCCTGGAACTCTCTGATCTCAGGTTATTCAAAAGCTGGAGAAGTAGCCATTGCAAGGGAACTCTTCGACTCTATGCCGGAAAAGAA TGTCATTTCCTGGACTTCCATGATTGGTGCATACTCTGATTCAGGGGATCTCAAAACAACGATACAGGTGTTCAAAGAAATGCCTCTAAGGAATGTGGTA TCGTGGAACTCGATGATCTCAAGCTACAACAACCATAACAAGTTCGCAGAAGCGTTGGATCTTTTCCTTCGGATGCAGTCAGAAGGATTCTTGCCTAATG GTTACACCTTTTTATCTGTTCTACTTGCTTGTTCTAAGCTAGGCAACGTGGAGTTTGGCAAATACGTACATTACCTGATACGAGATTGGTTGCAACTGCA AGTCATGGTAGGGACTGCCGTAGTCGAAATGTCATTAGCCATTAATGGAAGAGCAGAAGATGCCGTCAAGCTTTTCTGGTCGATGCAGAAGAACACGGAA TTGAAGCCTAACGATTTCAGTTTCACAAGCATGTTGTTCGTTTGTAGTCACGGAGGTTTGGTCGAAGAAGGCCGTGGGATCTTTAGTAGTATGGACGTGT ACTTCAATGTTATCGAAGATCGAACATTATGGATGTATGGTTGA
AA sequence Show only first row Show all	>Lus10005741 pacid=23169839 polypeptide=Lus10005741 locus=Lus10005741.g ID=Lus10005741.BGIv1.0 annot-version=v1.0 MPERLVEVCNRLITECVNSGDVRSARELFDEMKERDVISWNSLISGYSKAGEVAIARELFDSMPEKNVISWTSMIGAYSDSGDLKTTIQVFKEMPLRNVV SWNSMISSYNNHNKFAEALDLFLRMQSEGFLPNGYTFLSVLLACSKLGNVEFGKYVHYLIRDWLQLQVMVGTAVVEMSLAINGRAEDAVKLFWSMQKNTE LKPNDFSFTSMLFVCSHGGLVEEGRGIFSSMDVYFNVIEDRTLWMYG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06150	bHLH	bHLH089, EMB144...	EMBRYO DEFECTIVE 1444, basic h...		Lus10005741 [exp]	0	1

Compare expression of checked genes

Lus10005741 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.