Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23730 226 / 4e-72 EFO2, RUP2 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2, EARLY FLOWERING BY OVEREXPRESSION 2, Transducin/WD40 repeat-like superfamily protein (.1) AT5G52250 198 / 4e-61 EFO1, RUP1 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 1, EARLY FLOWERING BY OVEREXPRESSION 1, Transducin/WD40 repeat-like superfamily protein (.1) AT1G53090 137 / 3e-36 SPA4 SPA1-related 4 (.1.2) AT3G15354 130 / 1e-33 SPA3 SPA1-related 3 (.1) AT2G32950 115 / 1e-28 FUS1, EMB168, DET340, ATCOP1, COP1 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) AT4G11110 102 / 3e-24 SPA2 SPA1-related 2 (.1) AT2G46340 102 / 4e-24 SPA1 SUPPRESSOR OF PHYA-105 1, SPA (suppressor of phyA-105) protein family (.1) AT1G15440 50 / 1e-06 ATPWP2 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) AT4G02730 49 / 1e-06 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT3G21540 48 / 5e-06 transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027454 [exp] 371 / 9e-131 AT5G23730 248 / 2e-81 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2, EARLY FLOWERING BY OVEREXPRESSION 2, Transducin/WD40 repeat-like superfamily protein (.1) Lus10043323 [exp] 128 / 7e-33 AT3G15354 906 / 0.0 SPA1-related 3 (.1) Lus10019475 [exp] 125 / 4e-32 AT3G15354 992 / 0.0 SPA1-related 3 (.1) Lus10029990 [exp] 119 / 7e-30 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10035332 [exp] 119 / 7e-30 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10032358 [exp] 96 / 8e-22 AT4G11110 784 / 0.0 SPA1-related 2 (.1) Lus10033942 [exp] 88 / 3e-19 AT4G11110 766 / 0.0 SPA1-related 2 (.1) Lus10012475 [exp] 49 / 3e-06 AT3G21540 1094 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10023903 [exp] 48 / 6e-06 AT3G21540 1223 / 0.0 transducin family protein / WD-40 repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G143200 [exp] 234 / 2e-75 AT5G23730 395 / 2e-137 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2, EARLY FLOWERING BY OVEREXPRESSION 2, Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G140200 [exp] 229 / 8e-73 AT5G23730 427 / 3e-149 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2, EARLY FLOWERING BY OVEREXPRESSION 2, Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G119500 [exp] 131 / 4e-34 AT3G15354 982 / 0.0 SPA1-related 3 (.1) Potri.001G399600 [exp] 125 / 6e-32 AT3G15354 1003 / 0.0 SPA1-related 3 (.1) Potri.014G159300 [exp] 118 / 9e-30 AT2G32950 1091 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G095300 [exp] 112 / 2e-27 AT2G46340 846 / 0.0 SUPPRESSOR OF PHYA-105 1, SPA (suppressor of phyA-105) protein family (.1) Potri.004G002700 [exp] 104 / 5e-25 AT2G32950 832 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G021700 [exp] 102 / 1e-24 AT2G32950 686 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G137100 [exp] 102 / 4e-24 AT4G11110 1016 / 0.0 SPA1-related 2 (.1) Potri.001G094500 [exp] 99 / 7e-23 AT4G11110 1016 / 0.0 SPA1-related 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10005742 pacid=23169844 polypeptide=Lus10005742 locus=Lus10005742.g ID=Lus10005742.BGIv1.0 annot-version=v1.0 ATGAATAACCCCAACCCAGAACCTGAACAAGAGCGAGCCAGATGCGAGTGGGACTTCACCCTTCGAACCACCGTCTCCTCCGCTGCCGCCTCATCCTCCG ACGCCCTAGGCGTCATCGAATGCGACCCCTCCGGCCGCCTCATCGCCACCGGCGGCAACGCCAGAAANNNNNNNNNNNNNNNNNNCGAGCGGGATGAGCA CGGCGGCCGACGAGTATGGAGCGTCGACTACGGTTGGTTCGGCGGCGGCGCGACGGCGGTTCTCTGCGCCTCGGGTTCCGACGACGGGACTACCCACGTG TGGGACCCGCGATGCGAGGTAGGGGAATGCGTGGCTGTAATACGGCCAAGCGGGTCCGGATCTGCTGTTTGCTGCGTGGAGTTCAATCGTCCTCGTGGGA CGACGCTAGCCGTAGGATGCGCTGACCGGAAGGTGTACGTGTACGACTGCCGTATGCTGGTCCACCCTCTCCTTACCATGGGCGGGCACACCAAAACGGT AACGTACGTCAAGTTCCTCGACGAAACGACTCTGGTCTCCGCGTCTATAGACGGGAGCTTGAAGCTGTGGGATCTGGCTAACCATTCGGTCGAACCGGTT CGGACATACCGCGGACATTCCAACGAGGTTAAAGTGGCGTTGGTATATGATCAGCGGTGGGGCGAACCGATTTGGGTGCATGGGTTCGAACCGGCCGAAC CAAACACCGACGGGTTTGTTAGCAGTGTGTGTTGGAAGCAAGGTGTGGACGACAATGTCGACGGTGGACAATGCACGTTCGTGGCCGGCGGATCGGACGG TACGTTGCGAGTTTTCGAAGGGATAAAGAAGAAAACGGTGGCGCCGGCTTCTTCCGTCGCCGACGAACACATGAGATAA
AA sequence Show only first row Show all	>Lus10005742 pacid=23169844 polypeptide=Lus10005742 locus=Lus10005742.g ID=Lus10005742.BGIv1.0 annot-version=v1.0 MNNPNPEPEQERARCEWDFTLRTTVSSAAASSSDALGVIECDPSGRLIATGGNARXXXXXXXERDEHGGRRVWSVDYGWFGGGATAVLCASGSDDGTTHV WDPRCEVGECVAVIRPSGSGSAVCCVEFNRPRGTTLAVGCADRKVYVYDCRMLVHPLLTMGGHTKTVTYVKFLDETTLVSASIDGSLKLWDLANHSVEPV RTYRGHSNEVKVALVYDQRWGEPIWVHGFEPAEPNTDGFVSSVCWKQGVDDNVDGGQCTFVAGGSDGTLRVFEGIKKKTVAPASSVADEHMR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52250		EFO1, RUP1	REPRESSOR OF UV-B PHOTOMORPHOG...		Lus10005742 [exp]	0	1
					Lus10040269 [exp]	1.4	0.9084
AT1G14280		PKS2	phytochrome kinase substrate 2...		Lus10037181 [exp]	3.0	0.8616
					Lus10028567 [exp]	3.5	0.8884
AT4G25470	AP2_ERF	DREB1C, FTQ4, C...	FREEZING TOLERANCE QTL 4, DRE/...		Lus10017828 [exp]	3.5	0.8660
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10025231 [exp]	4.9	0.8624
AT4G25480	AP2_ERF	CBF3, DREB1A, A...	C-REPEAT BINDING FACTOR 3, de...		Lus10024491 [exp]	6.2	0.8828
AT1G21400			Thiamin diphosphate-binding fo...		Lus10000772 [exp]	6.9	0.8640
ATCG00490		ATCG00490.1, RB...	ribulose-bisphosphate carboxyl...		Lus10032825 [exp]	8.8	0.8633
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10012570 [exp]	9.2	0.8447
AT5G19580			glyoxal oxidase-related protei...		Lus10043230 [exp]	11.0	0.8648

Compare expression of checked genes

Lus10005742 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.