Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25540 1202 / 0 ATMSH3, MSH3 homolog of DNA mismatch repair protein MSH3 (.1) AT4G02070 266 / 2e-73 ATMSH6, MSH6-1 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) AT3G18524 203 / 2e-53 ATMSH2, MSH2 MUTS homolog 2 (.1) AT3G24495 169 / 1e-42 ATMSH7, MSH7, MSH6-2 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) AT4G17380 154 / 3e-38 MSH4, ATMSH4 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) AT3G20475 146 / 1e-35 ATMSH5 MUTS-homologue 5 (.1) AT5G54090 100 / 2e-21 DNA mismatch repair protein MutS, type 2 (.1) AT3G24320 100 / 3e-21 CHM1, ATMSH1, CHM, MSH1 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) AT1G65070 77 / 6e-14 DNA mismatch repair protein MutS, type 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027452 [exp] 674 / 0 AT4G25540 447 / 1e-148 homolog of DNA mismatch repair protein MSH3 (.1) Lus10027453 [exp] 363 / 4e-115 AT4G25540 248 / 9e-73 homolog of DNA mismatch repair protein MSH3 (.1) Lus10010010 [exp] 232 / 2e-62 AT4G02070 1559 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Lus10042967 [exp] 190 / 3e-49 AT3G18524 1479 / 0.0 MUTS homolog 2 (.1) Lus10032469 [exp] 176 / 1e-44 AT3G18524 1449 / 0.0 MUTS homolog 2 (.1) Lus10017724 [exp] 173 / 1e-43 AT3G24495 1267 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Lus10028966 [exp] 143 / 4e-36 AT4G17380 413 / 3e-137 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) Lus10033095 [exp] 144 / 9e-35 AT3G24495 1138 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Lus10007489 [exp] 139 / 2e-33 AT4G17380 1205 / 0.0 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G142900 [exp] 1374 / 0 AT4G25540 1313 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1) Potri.014G121701 [exp] 265 / 5e-73 AT4G02070 1402 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.012G060000 [exp] 199 / 3e-52 AT3G18524 1438 / 0.0 MUTS homolog 2 (.1) Potri.006G159200 [exp] 170 / 1e-42 AT3G24495 1372 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.006G156314 [exp] 169 / 1e-42 AT3G24495 1348 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.001G156200 [exp] 167 / 1e-42 AT4G17380 1226 / 0.0 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) Potri.011G089500 [exp] 140 / 7e-34 AT3G20475 1264 / 0.0 MUTS-homologue 5 (.1) Potri.008G191051 [exp] 100 / 2e-23 AT4G02070 294 / 1e-91 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.010G065000 [exp] 100 / 6e-21 AT3G24320 1670 / 0.0 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) Potri.012G005000 [exp] 88 / 2e-17 AT5G54090 847 / 0.0 DNA mismatch repair protein MutS, type 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01624 [flax] [poplar] MutS_I MutS domain I CL0023 [flax] [poplar] P-loop_NTPase PF00488 [flax] [poplar] MutS_V MutS domain V CL0023 [flax] [poplar] PF05192 [flax] [poplar] MutS_III MutS domain III CL0023 [flax] [poplar] PF05188 [flax] [poplar] MutS_II MutS domain II CL0023 [flax] [poplar] PF05190 [flax] [poplar] MutS_IV MutS family domain IV
Representative CDS sequence Show only first row Show all	>Lus10005743 pacid=23169825 polypeptide=Lus10005743 locus=Lus10005743.g ID=Lus10005743.BGIv1.0 annot-version=v1.0 ATGGGCAAGCATAAACAGCAAGTAATCTCCCGCTTCTTCGCTCCCAAACCCAAGCCCGACGATCATCCTCCTCCCTCGCCGCCGCCGCCTCCTCCTCCTC CGACCGCCACTTCCTCCCCAAAAATCACCGCCACCGTCTCATTCTCACCCGCCAAACGCAAGCTCCTCGCCGCCCAACTCACCTCCTGCAAGAAACCCAA ACTCTCCCCTCACACCCACAACCCCATCCCTCCATTCTCCCCTCACACCCACCAAAGATTCCTCGACAAACTCCTCGAACCCACTCCGATCGAATCCGAA ACCCCACCCTCCGTGAAGAAGTACACCCCACTGGAGGAGCAGGTTGTGGAGCTGAAAGCCAATCACCCCGACGTGATTATGATGGTTGAAGTTGGTTACA AGTACAGATTCTTCGGGGAAGACGCCGGGATTGCTTCCAGAGTGTTGGGGATTTTCGCGCACGTGGATCATAATTTTTTAACGGCGAGCATACCAACTGT TCGATTAAATGTCCATGTGAGGAGGCTGGTGAGTGCTGGGTATAAAGTTGGGGTTGTGAAGCAGACCGAAACTGCGGCGATTAAGGCTCATGGGGAGAAC AGAACAGGGCCTTTTTGTAGAGGGTTATCGGCGCTGTACACCAAAGCTACGCTGGAGGCGGCGGAGGGCATGGGAGGCAAGGAGGAAGGTTGTGGAGGGG AGAGTAACTACTTGTGTTGTGTTGTGGAGAGAAGTGAGGATATTTGTGGGATTGATGCGAAGATTGGGATTGTGGGCGTTGAGATTTCGACTGGGGATGT TGTGTATGGGGAGTTTAGTGATGGGATTATGAGGAGTGGGTTGGAGGCTTTGGTTTTGGGAGTGGCACCTGCTGAGTTGCTTCTCGGGGATCCGCTTTCG AAGCCGACTGAGAAGTTGCTATTGGCTTATGCGGGACCTGCATCGAACGTCCGAGTTGAGAGAATTTCACGTGATTGCTTTAGAGATGGTGATGCACTTG CTGAGGTGACGTCGTTGTATGAGAATCTGGGAATCATGAACATGCCTGATTTGGCTCTACAAGCATTGGCTTTGACTATTCGTCATCTAAAGCAGTTTGG GTTCGAAAGAATTTTATGCAATGATGCTTCATTCCGACCTTTGTCGAGCAGTATAGAGATGAACCTTTCAGCGAATACACTCCAACAGCTAGAGATTTTA AGGAATAATTCTGATGGATCTGAGTCTGGATCCTTATTGCACATCCTGAGTAACACTCTTACCATATATGGTTCAAGGCTACTGAGACGATGGGTGACAC ATCCTCTATGTGATAGAAATTTGATACATGCTCGTCTTGATGCGGTTTCTGAAATTGTGGATTCCTTGAGCTCCTGTAAACCTTCACGGACAATTGCTGA GCTTGACAAGGGAGATTCTGAAATAATCTCTGTACAAAATGACTTATATTACCTTCTTTCTACTGTATTAACAAATTTGGGAAGATTACCTGATATCCAG CGTGGGATAACAAGGATTTTCCATCGAACTGCTACCCCAAAAGAGTTCGTTGCAGTTATTGAAGCCATACTATATGCTGGTAAACAACTTAAGCGACTCT GTGTTCAAGAGCACAACAGTGATAGTGATCAGAGAACTCCTGTACACTCAGTTCTACTGAAAACATTAATCTCGACAGTATCATCATCCAGTGTGGTCCA CACTGCTGCAAAACTTTTGTCTTCTGTAAACAAAGAAGCAGCTGAGCAAGGGGATCTTCTGAACTTGGTTCTAGTGTCTGATGGACAATTCTCGGAGGTT GCAAAGGCTCGGAAAGCAGTTCAATTGGCGGAGGAGAAATTGGATTCTTTGTTGCCTTTGTATCGGAAGCAGCTTTGTGCTCGGAAGTTGGAATTTATCA GTGTATCTGGAATCACTCATTTGATAGAGTTGCCTATAGATGTCAAGGTGCCCTTGAACTGGGTCAAGGTGAACGGTACCAAGAAAACAATTCGATATCA CCCTCCCGAAGTATTGACTGCATTAGACCAGTTGTCAGTAGCTAAGGAGGAGCTGATGATCAATTGCCGAACTGCTTGGGACAGCTTCTTAAACGGTTTC AGTACATACTATATAGAGTTCCAAGCTGCTGTTCAAGCACTTGCTGCTTTGGATTGCTTACTTTCTCTTGCCACTCTTTCGAAGACTAAGAATTACATTC GCCCAACCTTCGTGGATGACAGTGAACCCGTCCAGATAGATATCTGCTGCGGTCGTCACCCGGTTTTGGAGACCATATTAAATGATACTTTTGTCCCCAA TGATACAAAGCTAAATGCTGGTGGAGAATACTGTCAGATTGTTACTGGACCGAACATGGGCGGGAAGAGTTGTTACATACGCCAAGTTGCTCTCATTGCT ATCATGGCGCAAGTTGGCTCATTTGTACCAGCATCATCTTGTAAGCTGCATGTGCTGGATGGTATCTATACTCGAATGGGAGCTTCCGATAGCATCCAAC AAGGACGAAGTACTTTCCTTGAAGAACTTAATGAGACTTCAAATATACTCCAGAAATGTACGTCTCGATCCTTAGTCATCATTGACGAGCTCGGTAGGGG CACAAGCACACATGACGGGGAAGCTATCGCTTTTGCCACTTTACACCATCTTCTGGAGCAGAAAAGATGCATGGTCCTTTTTGTGACCCACTACCCGAAA ATCTCCGAAATTAAAATGACATTTCCAGGCTCTGTGGGAGCATACCACGTTTCTTACCTGACTTCGACAAAAGCAACAGATGCTAACGACTTGACATCTG ATGGTGATGATGTTACTTATCTGTATAAGCTGGTCCCTGGTGTTTGCGAGAGGAGTTTCGGGTTCAAGGTTGCTGAGCTTGCTCAGCTACCATCGTCGTG TGTAAAACGAGCTGCTGAGATGGCTGCCAAGCTGGAAATGGCAGTAAGCGGCAAACTACAAGATGAGACAAAACAACTGCAGATCGTAGATCAATCAGAA GCTTATCAACTTTCAGAATCCGCAGATATAAAATTTACAGAGACAATCGCCTGCAAGTTCAGGGAAATTATGTTGAGCCTTAAGTTTGCATTAGCCGGTG GCAACCCTCCAAAAATTTACAAGCTTCTTCTGGATGCCAGAGGCTCGGTTAGGGAGTTAATGACGAAGTATGTATAA
AA sequence Show only first row Show all	>Lus10005743 pacid=23169825 polypeptide=Lus10005743 locus=Lus10005743.g ID=Lus10005743.BGIv1.0 annot-version=v1.0 MGKHKQQVISRFFAPKPKPDDHPPPSPPPPPPPPTATSSPKITATVSFSPAKRKLLAAQLTSCKKPKLSPHTHNPIPPFSPHTHQRFLDKLLEPTPIESE TPPSVKKYTPLEEQVVELKANHPDVIMMVEVGYKYRFFGEDAGIASRVLGIFAHVDHNFLTASIPTVRLNVHVRRLVSAGYKVGVVKQTETAAIKAHGEN RTGPFCRGLSALYTKATLEAAEGMGGKEEGCGGESNYLCCVVERSEDICGIDAKIGIVGVEISTGDVVYGEFSDGIMRSGLEALVLGVAPAELLLGDPLS KPTEKLLLAYAGPASNVRVERISRDCFRDGDALAEVTSLYENLGIMNMPDLALQALALTIRHLKQFGFERILCNDASFRPLSSSIEMNLSANTLQQLEIL RNNSDGSESGSLLHILSNTLTIYGSRLLRRWVTHPLCDRNLIHARLDAVSEIVDSLSSCKPSRTIAELDKGDSEIISVQNDLYYLLSTVLTNLGRLPDIQ RGITRIFHRTATPKEFVAVIEAILYAGKQLKRLCVQEHNSDSDQRTPVHSVLLKTLISTVSSSSVVHTAAKLLSSVNKEAAEQGDLLNLVLVSDGQFSEV AKARKAVQLAEEKLDSLLPLYRKQLCARKLEFISVSGITHLIELPIDVKVPLNWVKVNGTKKTIRYHPPEVLTALDQLSVAKEELMINCRTAWDSFLNGF STYYIEFQAAVQALAALDCLLSLATLSKTKNYIRPTFVDDSEPVQIDICCGRHPVLETILNDTFVPNDTKLNAGGEYCQIVTGPNMGGKSCYIRQVALIA IMAQVGSFVPASSCKLHVLDGIYTRMGASDSIQQGRSTFLEELNETSNILQKCTSRSLVIIDELGRGTSTHDGEAIAFATLHHLLEQKRCMVLFVTHYPK ISEIKMTFPGSVGAYHVSYLTSTKATDANDLTSDGDDVTYLYKLVPGVCERSFGFKVAELAQLPSSCVKRAAEMAAKLEMAVSGKLQDETKQLQIVDQSE AYQLSESADIKFTETIACKFREIMLSLKFALAGGNPPKIYKLLLDARGSVRELMTKYV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25540		ATMSH3, MSH3	homolog of DNA mismatch repair...		Lus10005743 [exp]	0	1
AT1G10180			unknown protein		Lus10018297 [exp]	1.0	0.9364
AT4G24710			P-loop containing nucleoside t...		Lus10043321 [exp]	2.4	0.9287
AT4G24790			AAA-type ATPase family protein...		Lus10033035 [exp]	3.2	0.9255
AT5G39550		ORTH1, VIM3	VARIANT IN METHYLATION 3, ORTH...		Lus10039127 [exp]	10.7	0.9240
AT5G35910			Polynucleotidyl transferase, r...		Lus10005691 [exp]	11.6	0.9286
AT1G19880			Regulator of chromosome conden...		Lus10033168 [exp]	13.6	0.9266
AT1G09760		U2A'	U2 small nuclear ribonucleopro...		Lus10028659 [exp]	16.0	0.9148
AT3G63240			DNAse I-like superfamily prote...		Lus10006904 [exp]	18.7	0.8849
AT5G24330		SDG34, ATXR6	SET DOMAIN PROTEIN 34, ARABIDO...		Lus10016526 [exp]	18.8	0.9107
AT5G11300		CYC2BAT, CYCA2;...	CYCLIN A2;2, mitotic-like cycl...		Lus10008103 [exp]	20.3	0.9139

Compare expression of checked genes

Lus10005743 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.