Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48900 560 / 0 single-stranded DNA endonuclease family protein (.1.2) AT1G01880 137 / 3e-34 5'-3' exonuclease family protein (.1.2) AT3G28030 121 / 1e-28 UVR1, UVH3 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) AT5G26680 82 / 1e-16 5'-3' exonuclease family protein (.1.2) AT1G18090 42 / 0.001 5'-3' exonuclease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027451 [exp] 1087 / 0 AT3G48900 560 / 0.0 single-stranded DNA endonuclease family protein (.1.2) Lus10041375 [exp] 121 / 7e-29 AT1G01880 660 / 0.0 5'-3' exonuclease family protein (.1.2) Lus10036554 [exp] 112 / 9e-26 AT1G01880 624 / 0.0 5'-3' exonuclease family protein (.1.2) Lus10039424 [exp] 109 / 1e-24 AT3G28030 548 / 8e-170 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) Lus10000270 [exp] 67 / 1e-11 AT5G26680 512 / 0.0 5'-3' exonuclease family protein (.1.2) Lus10039423 [exp] 60 / 1e-09 AT3G28030 269 / 3e-82 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) Lus10011991 [exp] 53 / 6e-07 AT1G29630 626 / 0.0 5'-3' exonuclease family protein (.1.2.3) Lus10027250 [exp] 47 / 3e-05 AT1G18090 495 / 1e-170 5'-3' exonuclease family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G142800 [exp] 693 / 0 AT3G48900 609 / 0.0 single-stranded DNA endonuclease family protein (.1.2) Potri.014G077300 [exp] 121 / 9e-29 AT1G01880 667 / 0.0 5'-3' exonuclease family protein (.1.2) Potri.017G070500 [exp] 120 / 3e-28 AT3G28030 788 / 0.0 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) Potri.013G000700 [exp] 72 / 3e-13 AT5G26680 650 / 0.0 5'-3' exonuclease family protein (.1.2) Potri.002G152801 [exp] 57 / 1e-08 AT1G01880 190 / 7e-55 5'-3' exonuclease family protein (.1.2) Potri.015G041400 [exp] 50 / 4e-06 AT1G18090 584 / 0.0 5'-3' exonuclease family protein (.1.2) Potri.011G077001 [exp] 49 / 8e-06 AT1G29630 750 / 0.0 5'-3' exonuclease family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0464 [flax] [poplar] 5_3_exonuc_C PF00867 [flax] [poplar] XPG_I XPG I-region CL0280 [flax] [poplar] PIN PF00752 [flax] [poplar] XPG_N XPG N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10005744 pacid=23169819 polypeptide=Lus10005744 locus=Lus10005744.g ID=Lus10005744.BGIv1.0 annot-version=v1.0 ATGGGAGTGAAGAACTTGTGGGACATCTTAGAATCATGCAAGAAAACATTACCACTACATCATCTCCAGAACAAAAGGGTGTGCATAGATCTCTCTTGTT GGATGGTTCAGCTCGAAAATGTCAACAAATCACACTGTGCTCTCAAAGAAAAACTCTACCTCAAGGGTCTTTTCCATCGCCTTAGAGCTCTCATCGCCTT GAATTGCAGCCTTATCTTGGTTACTGATGGTTCAATCCCAGCAATCAAATTGGCTACTTATAGACGAAGGTTAAACTCTGTACCAGAGGCTACTCAGGAC GAAACGAGTTCACAGAACGCATGCTCGCTTAAACGAAATGCAGGTTCGGAGTTCTCTCGCATGGTAAATGAAGCTAAGTTGCTCGGTTCAGCACTTGGGA TTCCTTGCTTAGACAGCATGGAGGAAGCTGAAGCACAATGTGCAGCGCTGAATGCAGAATCTCAGTGTGATGGATGCTTCAGTTCAGACTCAGACATTTT CCTTTTTGGTGCGAGAACTGTATACCGAGACATATCCCTTGGGGATGGTGGTCACGTTGTGTGCTATGAAATGGCTGACATCGAGAGGAAACTCGGTTTT GGGAGAAACTCATTGATTACGCTGGCCCTTCTTCTCGGAAGCGACTATTCTAATGGAGTTTACGGCCTAGGTCCAGAGTCAGCTTGCCGGATTGTTAAAA CCATCGGAGACAATACTATCCTTCAGAGAATAGCATCAGAAGGACTTTCCTTGGCAAAGCGGAAGAGTAAAAAGAAGAATGGTGCTGCATCTTTGAAGGA GAACCAGCTGGAACCTGAAATCCCTGCCGATACAGAACGACAGAAACAGTTTCGGCAAGTAATCGACGCATATCTAAAGCCCAAATGCCACTCCGTCGAT TCAGAATCAGTCTACCGGGCTCTAGGTCTGTACCCATTTCAACATAACAAGCTACAACAGATCTGTGCAGACTTCTTTGGTTGGCCTCCTGAAAAAACAG ATGAATACATCCTTCTGAAAGTAGCCGAGAGAGACCTTAGACGATTCGCAAACTTGCGTTCGACTTCATCCAAACTGGGAGTTGCACCTTCTCTGGACAT GCTGCCAATCTATTGCCCTGTGGTGGAAATCTTTAAACCGCGAAAAGTGCAAGGGAGAGAATGCTTCGAGGTTTCGTGGGAAGGTTTTGATGGACTTAAG ACGTCTATAGTTCCTGCTGACCTTGTACAGAAAGCTTGCCCAGAAAGGATTGCAGAGTTTGAAGAGAAAAAAACTCAGGCAAAGAAACAAAACCAGCGCA AACCGAGAGCAAAGAAATCACAGAAGGGACATGATCTTGCCGAGCTAGACATGAAACTTCAGAACCTAATGCTCGAAATCGAATCAGGATCAGGAGGGAG CAGCAGTGTTCCATCGAACGGTGAGATCGAGAGCTCTGTCAAGATGACCAGTTCGTCTATCATCGATTTGACAGGAGATCAGTATGAAGCCACAGGTATC GAGAGGAATGCCATGTCATCAGAGTTCGTCGATCTTTTGACCCCTGCTCCACTACCTGGTAAGAGTCTCACAGTTTCGACTTTTCGAAATGAGATTGACG ATAGAGCCATTGTTATTCCGGTGATAAACTTGAGTGACTCGGAGACAGACAAATCCCCAGAGCCTCTGGGGAAACGTTTGTACAATTACATCAAGAAGCT GTAA
AA sequence Show only first row Show all	>Lus10005744 pacid=23169819 polypeptide=Lus10005744 locus=Lus10005744.g ID=Lus10005744.BGIv1.0 annot-version=v1.0 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWMVQLENVNKSHCALKEKLYLKGLFHRLRALIALNCSLILVTDGSIPAIKLATYRRRLNSVPEATQD ETSSQNACSLKRNAGSEFSRMVNEAKLLGSALGIPCLDSMEEAEAQCAALNAESQCDGCFSSDSDIFLFGARTVYRDISLGDGGHVVCYEMADIERKLGF GRNSLITLALLLGSDYSNGVYGLGPESACRIVKTIGDNTILQRIASEGLSLAKRKSKKKNGAASLKENQLEPEIPADTERQKQFRQVIDAYLKPKCHSVD SESVYRALGLYPFQHNKLQQICADFFGWPPEKTDEYILLKVAERDLRRFANLRSTSSKLGVAPSLDMLPIYCPVVEIFKPRKVQGRECFEVSWEGFDGLK TSIVPADLVQKACPERIAEFEEKKTQAKKQNQRKPRAKKSQKGHDLAELDMKLQNLMLEIESGSGGSSSVPSNGEIESSVKMTSSSIIDLTGDQYEATGI ERNAMSSEFVDLLTPAPLPGKSLTVSTFRNEIDDRAIVIPVINLSDSETDKSPEPLGKRLYNYIKKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48900			single-stranded DNA endonuclea...		Lus10005744 [exp]	0	1
AT5G43960			Nuclear transport factor 2 (NT...		Lus10023722 [exp]	2.6	0.9384
AT2G26900		BASS2	bile acid:sodium symporter fam...		Lus10006672 [exp]	6.0	0.9296
AT3G63240			DNAse I-like superfamily prote...		Lus10042620 [exp]	7.3	0.9003
AT2G39670			Radical SAM superfamily protei...		Lus10000953 [exp]	8.0	0.8848
AT4G18820			AAA-type ATPase family protein...		Lus10005422 [exp]	8.4	0.9217
AT3G10690		GYRA	DNA GYRASE A (.1)		Lus10008940 [exp]	9.2	0.9239
AT1G23790			Plant protein of unknown funct...		Lus10013006 [exp]	10.0	0.9046
AT3G10310			P-loop nucleoside triphosphate...		Lus10035442 [exp]	11.6	0.9230
AT4G16490			ARM repeat superfamily protein...		Lus10014691 [exp]	13.3	0.9096
AT3G10140		RECA3	RECA homolog 3 (.1)		Lus10018037 [exp]	13.3	0.9029

Compare expression of checked genes

Lus10005744 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.