Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48880 431 / 4e-153 RNI-like superfamily protein (.1.2) AT4G11580 121 / 4e-32 RNI-like superfamily protein (.1) AT4G05497 67 / 1e-12 RNI-like superfamily protein (.1) AT5G57900 64 / 1e-11 SKIP1 SKP1 interacting partner 1 (.1) AT4G05490 58 / 1e-09 RNI-like superfamily protein (.1) AT4G05460 57 / 5e-09 RNI-like superfamily protein (.1) AT4G30640 53 / 9e-08 RNI-like superfamily protein (.1) AT4G05470 53 / 9e-08 RNI-like superfamily protein (.1) AT4G08980 52 / 2e-07 FBW2 F-BOX WITH WD-40 2 (.1.2.3.4.5) AT4G05475 51 / 4e-07 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027450 [exp] 607 / 0 AT3G48880 434 / 2e-154 RNI-like superfamily protein (.1.2) Lus10023277 [exp] 63 / 6e-11 AT4G05460 247 / 3e-80 RNI-like superfamily protein (.1) Lus10038528 [exp] 63 / 6e-11 AT4G05460 249 / 5e-81 RNI-like superfamily protein (.1) Lus10018737 [exp] 45 / 4e-05 AT1G47056 638 / 0.0 VIER F-box proteine 1 (.1) Lus10026115 [exp] 44 / 0.0001 AT4G05460 166 / 3e-49 RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G139700 [exp] 446 / 3e-159 AT3G48880 386 / 2e-135 RNI-like superfamily protein (.1.2) Potri.012G137700 [exp] 444 / 2e-158 AT3G48880 389 / 1e-136 RNI-like superfamily protein (.1.2) Potri.016G019500 [exp] 72 / 3e-14 AT3G48880 76 / 7e-16 RNI-like superfamily protein (.1.2) Potri.001G373900 [exp] 64 / 1e-11 AT3G48880 50 / 7e-07 RNI-like superfamily protein (.1.2) Potri.012G106700 [exp] 57 / 6e-09 AT3G48880 55 / 3e-08 RNI-like superfamily protein (.1.2) Potri.018G104900 [exp] 49 / 2e-06 AT5G57900 377 / 8e-132 SKP1 interacting partner 1 (.1) Potri.002G099100 [exp] 44 / 6e-05 AT4G08980 352 / 1e-121 F-BOX WITH WD-40 2 (.1.2.3.4.5) Potri.014G023500 [exp] 44 / 9e-05 AT1G47056 636 / 0.0 VIER F-box proteine 1 (.1) Potri.010G054600 [exp] 42 / 0.0003 AT3G26000 395 / 7e-135 Ribonuclease inhibitor (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005745 pacid=23169832 polypeptide=Lus10005745 locus=Lus10005745.g ID=Lus10005745.BGIv1.0 annot-version=v1.0 ATGGATGAGGGTGGATCATTAGTGAGGAGATGGGAGGATCTGGACACAGATATCTTGGTGAAGATATTCCAGTCATTCGACATCTTCGAATTGACTTCAG GGCTAGCTCACGTTTGTAGTTCGTGGCGTATGGCCTGCTCCGATCCTCTGCTGTGGAAAACGCTCGACTTGTCGATTATGAAATCCAATTTCATTAAGAT CCCTCTGGAGCCCTATGTGTATGTCAATGGCCGATCAGATAAGACTCTGACGCGATTACTGAGGATATCCTTGAATCTTAGTCAAGGAAGCATCACTTCG TTGATATTCCATTTCAACTTGTATGTGAGCGATGAACAGCTGACTTACACAGCTGAAAGGAGTCCACATCTCAAAAGGCTGGTCCTGCCAGCATGGAACC GAATAAAAAAGACCGGCATATGCGCAGCGATTCGCTCATGGAAAGAACTCGAATCCCTAACAATGCCGAGTATAGCAAATCCTCCGTATCTCATGGACGA AATCGCCAATAGCTGCGAAAACTTCCGAGAGCTGAAAGTCATGGGACCATTCGACATTTTCTTCGCATCAACACTGGCAGCGCGTCTCACGAGATTGAAA GTGTTGAGCCTCCGGTGCTCGATGCTACCAAGGGACGCCCTGATCATCCTACTGGACGGCCTGCATAATCTCGAAGTCCTCAACATATCACACTGCCTTC TGATCGAAATCCCCCCACCTCCCGCGCCTAGACGAGTCATGACGGAGCTAGACTCCACGATTCTGCAGAAGGCGAAGCGACTGAGTCAGTTCTTAACGTG CATGGATGAGGAGTCGTGCATCATGTGCCAGAGGACCAAGGCCGATGAAGGGCTCATGCGGTGGTACAGGTACGAGGAAGGACTGTGGAAAGAGGATGAG GTGAACTCTCTTGCTCTGTAA
AA sequence Show only first row Show all	>Lus10005745 pacid=23169832 polypeptide=Lus10005745 locus=Lus10005745.g ID=Lus10005745.BGIv1.0 annot-version=v1.0 MDEGGSLVRRWEDLDTDILVKIFQSFDIFELTSGLAHVCSSWRMACSDPLLWKTLDLSIMKSNFIKIPLEPYVYVNGRSDKTLTRLLRISLNLSQGSITS LIFHFNLYVSDEQLTYTAERSPHLKRLVLPAWNRIKKTGICAAIRSWKELESLTMPSIANPPYLMDEIANSCENFRELKVMGPFDIFFASTLAARLTRLK VLSLRCSMLPRDALIILLDGLHNLEVLNISHCLLIEIPPPPAPRRVMTELDSTILQKAKRLSQFLTCMDEESCIMCQRTKADEGLMRWYRYEEGLWKEDE VNSLAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48880			RNI-like superfamily protein (...		Lus10005745 [exp]	0	1
AT1G01500			Erythronate-4-phosphate dehydr...		Lus10036394 [exp]	29.3	0.7047
AT4G21210		ATRP1	PPDK regulatory protein (.1.2)		Lus10006758 [exp]	29.5	0.7210
AT5G02050			Mitochondrial glycoprotein fam...		Lus10024352 [exp]	29.7	0.6961
AT5G40470			RNI-like superfamily protein (...		Lus10002515 [exp]	54.6	0.7032
AT1G16760			Protein kinase protein with ad...		Lus10009895 [exp]	58.3	0.6854
AT4G15410		PUX5, ATB' GAMM...	serine/threonine protein phosp...		Lus10015145 [exp]	61.2	0.6460
AT1G61065			Protein of unknown function (D...		Lus10011208 [exp]	67.0	0.6827
AT3G03440			ARM repeat superfamily protein...		Lus10017635 [exp]	91.6	0.6449
AT4G16400			unknown protein		Lus10016614 [exp]	98.8	0.6748
AT1G60940		SNRK2-10, SNRK2...	SNF1-RELATED KINASE 2B, SUCROS...		Lus10015464 [exp]	103.0	0.6765

Compare expression of checked genes

Lus10005745 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.