Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027447 [exp] 293 / 1e-100 AT3G46580 47 / 3e-06 METHYL-CPG-BINDING DOMAIN PROTEIN 05, methyl-CPG-binding domain protein 5 (.1) Lus10014989 [exp] 53 / 5e-08 AT5G52230 86 / 4e-17 methyl-CPG-binding domain protein 13 (.1.2) Lus10038869 [exp] 50 / 3e-07 AT5G52230 82 / 4e-16 methyl-CPG-binding domain protein 13 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G140100 [exp] 48 / 2e-06 AT5G52230 81 / 2e-15 methyl-CPG-binding domain protein 13 (.1.2) Potri.012G138300 [exp] 46 / 1e-05 AT5G52230 84 / 2e-16 methyl-CPG-binding domain protein 13 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF01429 [flax] [poplar] MBD Methyl-CpG binding domain
Representative CDS sequence Show only first row Show all	>Lus10005748 pacid=23169813 polypeptide=Lus10005748 locus=Lus10005748.g ID=Lus10005748.BGIv1.0 annot-version=v1.0 ATGGAGATTCCGTTTCCGGCGATCGACGGCAAGGCCGACGAAGTACTTCCGGAAGGTTGGACGGTTCAGGTGAACGTTAGGAAGGACGGCAGGAAGGACA AGCGTTACACTGAGCCTATTCATGGCTATACGTTCCGATCGTTGAAGGAAGTGCATAGCTCCATGAAAGCCACTGAAGAAGTTTCTCCAGAAGTGGAAAT CCTCCCAGATATGCAAACCAACGGATTCAAGAAGAAGGGAGGTAAACAGCTTCCTTGCCGGGCTTCGAAGAGAAATGCCGGCCCACCACTCAAGCTTCAC TCAACACCAAACAACAATACTCTTAAGCAGAAGCAGCCCGGCACGCCTGGCGAGGTAAGAGAAGGCCAGTCCGGTAATAGCAATAGGAGGAAGAAAGGGA ACGATGTTGATGCTGATGACGAATGTGATGAGCTAGCACCGTTGGTGAAGCAATGTATGGACATGGTTCAATCGCTCCCTGGTGTGGATGACGATCCGGA GTTTGACTTGACGATTGTGGCCAGCAGGCTGTTCGGGAAGAAGATATATTGCGTAATGTTCGTTAGCCTACATGAGGACAAGCGGATGAAGTGGCTTAGG GAGTATGCTAGAGAAGGAGTCACTGCAGACTGA
AA sequence Show only first row Show all	>Lus10005748 pacid=23169813 polypeptide=Lus10005748 locus=Lus10005748.g ID=Lus10005748.BGIv1.0 annot-version=v1.0 MEIPFPAIDGKADEVLPEGWTVQVNVRKDGRKDKRYTEPIHGYTFRSLKEVHSSMKATEEVSPEVEILPDMQTNGFKKKGGKQLPCRASKRNAGPPLKLH STPNNNTLKQKQPGTPGEVREGQSGNSNRRKKGNDVDADDECDELAPLVKQCMDMVQSLPGVDDDPEFDLTIVASRLFGKKIYCVMFVSLHEDKRMKWLR EYAREGVTAD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10005748 [exp]	0	1
					Lus10027448 [exp]	3.2	0.8595
AT4G37770		ACS8	1-amino-cyclopropane-1-carboxy...		Lus10011565 [exp]	3.6	0.8604
AT5G20480		EFR	EF-TU receptor (.1)		Lus10026938 [exp]	4.9	0.8339
AT3G55050			Protein phosphatase 2C family ...		Lus10015047 [exp]	5.5	0.8529
AT1G68040			S-adenosyl-L-methionine-depend...		Lus10007950 [exp]	6.5	0.7862
AT3G46580		MBD05, MDB5, MD...	METHYL-CPG-BINDING DOMAIN PROT...		Lus10027447 [exp]	6.7	0.7801
AT5G24320			Transducin/WD40 repeat-like su...		Lus10022377 [exp]	8.7	0.7558
AT1G76520			Auxin efflux carrier family pr...		Lus10025166 [exp]	10.8	0.7134
AT1G25270			nodulin MtN21 /EamA-like trans...		Lus10012691 [exp]	10.9	0.7591
AT3G12620			Protein phosphatase 2C family ...		Lus10003993 [exp]	11.4	0.8245

Compare expression of checked genes

Lus10005748 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.