Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52210 337 / 1e-119 ATGB1, ATARLB1 GTP-binding protein 1 (.1.2) AT1G70490 127 / 5e-37 ATARFA1D Ras-related small GTP-binding family protein (.1.2.3) AT1G10630 127 / 5e-37 ATARFA1F ADP-ribosylation factor A1F (.1) AT1G23490 127 / 5e-37 ATARFA1A, ATARF1, ATARF ADP-RIBOSYLATION FACTOR 1A, ADP-ribosylation factor 1 (.1) AT5G14670 127 / 5e-37 ATARFA1B ADP-ribosylation factor A1B (.1) AT2G47170 126 / 9e-37 ARF1A1C, ARF1 Ras-related small GTP-binding family protein (.1) AT3G62290 126 / 1e-36 ATARFA1E ADP-ribosylation factor A1E (.1.2.3) AT2G15310 122 / 7e-35 ATARFB1A ADP-ribosylation factor B1A (.1) AT2G24765 119 / 7e-34 ARF3, ARL1, ATARL1 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) AT3G22950 115 / 2e-32 ATARFC1 ADP-ribosylation factor C1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038871 [exp] 391 / 6e-139 AT5G52210 326 / 3e-113 GTP-binding protein 1 (.1.2) Lus10014991 [exp] 384 / 5e-138 AT5G52210 320 / 1e-112 GTP-binding protein 1 (.1.2) Lus10027446 [exp] 379 / 3e-136 AT5G52210 314 / 1e-110 GTP-binding protein 1 (.1.2) Lus10001524 [exp] 130 / 6e-38 AT1G10630 372 / 3e-133 ADP-ribosylation factor A1F (.1) Lus10031436 [exp] 128 / 3e-37 AT5G14670 368 / 2e-132 ADP-ribosylation factor A1B (.1) Lus10030884 [exp] 127 / 6e-37 AT5G14670 371 / 4e-133 ADP-ribosylation factor A1B (.1) Lus10013021 [exp] 127 / 5e-36 AT5G14670 374 / 9e-133 ADP-ribosylation factor A1B (.1) Lus10029144 [exp] 130 / 2e-35 AT5G14670 371 / 8e-129 ADP-ribosylation factor A1B (.1) Lus10030605 [exp] 127 / 1e-33 AT1G60490 1325 / 0.0 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G138500 [exp] 369 / 4e-132 AT5G52210 348 / 7e-124 GTP-binding protein 1 (.1.2) Potri.015G140400 [exp] 363 / 9e-130 AT5G52210 343 / 1e-121 GTP-binding protein 1 (.1.2) Potri.013G005600 [exp] 127 / 4e-37 AT1G10630 374 / 7e-135 ADP-ribosylation factor A1F (.1) Potri.005G007300 [exp] 127 / 4e-37 AT1G10630 374 / 7e-135 ADP-ribosylation factor A1F (.1) Potri.005G007400 [exp] 127 / 4e-37 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.002G191400 [exp] 127 / 4e-37 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.014G116500 [exp] 127 / 4e-37 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.013G005500 [exp] 127 / 4e-37 AT5G14670 372 / 4e-134 ADP-ribosylation factor A1B (.1) Potri.005G142100 [exp] 126 / 1e-36 AT1G10630 339 / 5e-121 ADP-ribosylation factor A1F (.1) Potri.008G100000 [exp] 125 / 2e-36 AT1G10630 366 / 1e-131 ADP-ribosylation factor A1F (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00025 [flax] [poplar] Arf ADP-ribosylation factor family
Representative CDS sequence Show only first row Show all	>Lus10005749 pacid=23169818 polypeptide=Lus10005749 locus=Lus10005749.g ID=Lus10005749.BGIv1.0 annot-version=v1.0 ATGTTTTCATTGTTCTATGGCCTCTTTAAGTATATGTTCAGTAAGACGGAGTTTCATGTGCTCATTCTGGGGATCGACAAGGCCGGGAAAACGACCCTGC TCGAAAAGTTGAAGACAGTATACTCAAATTCAGAAGGCCTCCCACCTGATAGGATCGTTCCAACTGTCGGACTAAATATTGGTCGTCTTGAAGTGTCGAA TTCCAAACTTGTGTTCTGGGATCTGGGAGGCCAGATTGGACTGCGCTCGATTTGGGAGAAATATTATGAAGAAGCACATGCCATTGTATTTGTAATCGAT GCTGCCTGCCCTTCCAGGTTTGAAGATGCAAAATCTGCTTTAGAGAAAGTTCTAAGGCATGATGATCTGCAAGGTGCCCCTCTTCTGGTAATGTCAAACA AACAGGACCTTCCAGACGCCGTAACAGCTGAAGAACTGGGTAGATATTTGGACCTCAAGAAGTTGGATGAAAGGGTTTATATGTTTGAAGCTGTTTCAGC GTACGATGGGTTGGGTATCAAAGGAAGCCTAGAATGGCTCGTTGAGGCAATGGAACGGAGCAAGAGAACCGAAACGTTAAGACTTCGTGCAGGGATGAAT GGTGCTGGCGCATAG
AA sequence Show only first row Show all	>Lus10005749 pacid=23169818 polypeptide=Lus10005749 locus=Lus10005749.g ID=Lus10005749.BGIv1.0 annot-version=v1.0 MFSLFYGLFKYMFSKTEFHVLILGIDKAGKTTLLEKLKTVYSNSEGLPPDRIVPTVGLNIGRLEVSNSKLVFWDLGGQIGLRSIWEKYYEEAHAIVFVID AACPSRFEDAKSALEKVLRHDDLQGAPLLVMSNKQDLPDAVTAEELGRYLDLKKLDERVYMFEAVSAYDGLGIKGSLEWLVEAMERSKRTETLRLRAGMN GAGA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52210		ATGB1, ATARLB1	GTP-binding protein 1 (.1.2)		Lus10005749 [exp]	0	1
AT1G48840			Plant protein of unknown funct...		Lus10020973 [exp]	3.0	0.8810
AT3G05345			Chaperone DnaJ-domain superfam...		Lus10029916 [exp]	3.7	0.8574
AT1G70180			Sterile alpha motif (SAM) doma...		Lus10030661 [exp]	4.0	0.8492
AT1G72650	MYB	TRFL6	TRF-like 6 (.1.2)		Lus10037678 [exp]	7.5	0.8232
AT5G01450			RING/U-box superfamily protein...		Lus10002487 [exp]	8.3	0.8502
AT1G57790			F-box family protein (.1)		Lus10021352 [exp]	10.4	0.8190
AT2G33590			NAD(P)-binding Rossmann-fold s...		Lus10024138 [exp]	12.4	0.8489
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10014186 [exp]	13.2	0.8439
AT5G03905			Iron-sulphur cluster biosynthe...		Lus10014201 [exp]	13.4	0.8323
AT1G77930			Chaperone DnaJ-domain superfam...		Lus10001296 [exp]	14.9	0.8481

Compare expression of checked genes

Lus10005749 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.