Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24320 246 / 1e-78 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT1G71850 160 / 8e-45 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G48040 140 / 1e-37 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT2G39120 113 / 6e-28 WTF9 what's this factor 9, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT3G58520 106 / 3e-25 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT2G31290 98 / 2e-22 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT3G63090 96 / 1e-21 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G45790 84 / 1e-17 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT1G06440 71 / 2e-13 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT4G01037 68 / 3e-12 AtWTF1 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035074 [exp] 175 / 6e-49 AT1G71850 479 / 5e-164 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10017896 [exp] 173 / 3e-48 AT1G71850 478 / 7e-164 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10027445 [exp] 156 / 3e-46 AT4G24320 206 / 9e-66 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10011327 [exp] 134 / 1e-35 AT5G48040 425 / 1e-147 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10012201 [exp] 130 / 2e-34 AT5G48040 424 / 1e-147 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10015979 [exp] 131 / 5e-34 AT3G58520 564 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10038710 [exp] 112 / 2e-27 AT2G39120 467 / 4e-164 what's this factor 9, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10000847 [exp] 106 / 1e-25 AT3G58520 501 / 1e-178 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10003062 [exp] 94 / 6e-21 AT2G31290 558 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G223200 [exp] 307 / 1e-101 AT4G24320 437 / 4e-152 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.013G115500 [exp] 180 / 2e-50 AT1G71850 474 / 1e-161 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.006G195900 [exp] 139 / 3e-37 AT3G58520 578 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.002G230900 [exp] 139 / 4e-37 AT5G48040 484 / 9e-171 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.008G036600 [exp] 109 / 2e-26 AT2G39120 509 / 0.0 what's this factor 9, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.005G191100 [exp] 93 / 1e-20 AT2G31290 575 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.002G220000 [exp] 93 / 1e-20 AT3G63090 499 / 7e-177 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G244900 [exp] 92 / 2e-20 AT1G06440 503 / 7e-180 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G245100 [exp] 86 / 2e-18 AT1G06440 544 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G233900 [exp] 80 / 3e-16 AT5G62990 498 / 6e-174 embryo defective 1692, Ubiquitin carboxyl-terminal hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11955 [flax] [poplar] PORR Plant organelle RNA recognition domain
Representative CDS sequence Show only first row Show all	>Lus10005750 pacid=23169831 polypeptide=Lus10005750 locus=Lus10005750.g ID=Lus10005750.BGIv1.0 annot-version=v1.0 ATGGGAAACTCAGATACAACCGGGAGAGAAGAAATAGGTAGCCTCACACTGCAGAAAGAGCTTTGGCAGTGGTCAACCAAATCAACTCCGGCTAGATTTC CGCCGTTTGGAGATGGCCGGGAAAAACAGCACTCCTCCTCGGCAGCCAAACTGCTGCCGCACAACCTCCGCCAAAGCCGGACGTTCATCGCCGTCAGGAT AAAATGGGTCCCCGACGAAGACCTCGACGCAGCAGTTTCCAAGGAGAAGGATTTCAAGCAAGTAATCTCCATCAAGAACCACATCCTCACTTCTCCAACA AAGTCCCTCCCACTAACATCCATTTCCCTCCTCAAACCTAATTTCGACCTTCCCATGGCGACCTCAAGGTACCTGAGCAGATTCCGCTTCGTTTTCTCCA TATTTCAGCCTTCTCCTTCGCTTCCGCTCCACGTGAAGCTCACTCGCCCAGCGTTCAAGGTCCACACGGAAGAGCAACAAATTCTCAATTCATCCGCTCA TCGGGACGACACGGTGAAAAGGTTGGCTAGGGTCTTAATGCTCTGTAAGAGAATGAGATTGCCATTGGATGTTATTGACAAATTCAAGCGCGATTTAGGA TTGCCTCATGATTATGTATCCAAGCTATTGTCCGATTATCCTGATTACTTCCAAATCGTTGGCGATGGAGAGATGCTCTGTTTAGAACTGGTTAAGTGGA GGGAAGAACTTGCTGTGTCCGAGATGGAGAGGAGAATGGCGTTAGGGGATCTGAGCAACGTCAAGAAAGGAGCTAGGATCGGGTTCTTGTCGTGTTTCCA CGAGTTGATGTGTCTGTTGGTGTCGAAGAAGACCGAGAGCGAGAATGTGCTTCGATTGGGGGAGTGTTTGGGGTTGCGGAGGAGGTTTAAGCGAGCTTTG GTTCAGCATCCGGGGATATTCTATCTTTCGCATAAGGTTAGGACGCAGACTGTCGTGCTTAGGGAGGCGTTTTCGAAGGATCTGTTGAAGGTGAAGCATC CTTTGATGGGGATGAGGTTTAGGTACATTCATCTTATGAATATAGATAGGGAGAGGAGGAGACGAAGGAAGTTGGAGAGGGAGAGCAGTTTGAGGATTAG GAATCAGGTGGCTTGTGAAAGGTAA
AA sequence Show only first row Show all	>Lus10005750 pacid=23169831 polypeptide=Lus10005750 locus=Lus10005750.g ID=Lus10005750.BGIv1.0 annot-version=v1.0 MGNSDTTGREEIGSLTLQKELWQWSTKSTPARFPPFGDGREKQHSSSAAKLLPHNLRQSRTFIAVRIKWVPDEDLDAAVSKEKDFKQVISIKNHILTSPT KSLPLTSISLLKPNFDLPMATSRYLSRFRFVFSIFQPSPSLPLHVKLTRPAFKVHTEEQQILNSSAHRDDTVKRLARVLMLCKRMRLPLDVIDKFKRDLG LPHDYVSKLLSDYPDYFQIVGDGEMLCLELVKWREELAVSEMERRMALGDLSNVKKGARIGFLSCFHELMCLLVSKKTESENVLRLGECLGLRRRFKRAL VQHPGIFYLSHKVRTQTVVLREAFSKDLLKVKHPLMGMRFRYIHLMNIDRERRRRRKLERESSLRIRNQVACER

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71850			Ubiquitin carboxyl-terminal hy...		Lus10005750 [exp]	0	1
AT3G07590			Small nuclear ribonucleoprotei...		Lus10016068 [exp]	2.8	0.8515
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Lus10043114 [exp]	17.1	0.7744
AT4G21110			G10 family protein (.1)		Lus10014385 [exp]	18.2	0.7774
AT3G54560		HTA11	histone H2A 11 (.1)		Lus10003088 [exp]	21.2	0.7630
AT4G39200			Ribosomal protein S25 family p...		Lus10035060 [exp]	22.2	0.7677
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Lus10005348 [exp]	28.0	0.7624
AT4G17520			Hyaluronan / mRNA binding fami...		Lus10004362 [exp]	33.9	0.7088
AT1G58470		XF41, ATRBP1	RNA-binding protein 1 (.1)		Lus10007721 [exp]	34.0	0.7687
AT1G55040			zinc finger (Ran-binding) fami...		Lus10031502 [exp]	39.5	0.6821
AT3G05070			unknown protein		Lus10042290 [exp]	43.1	0.7491

Compare expression of checked genes

Lus10005750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.