Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52200 101 / 6e-27 AtI-2 inhibitor-2, phosphoprotein phosphatase inhibitors (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027444 [exp] 241 / 1e-81 AT5G52200 123 / 4e-35 inhibitor-2, phosphoprotein phosphatase inhibitors (.1.2) Lus10014992 [exp] 146 / 2e-44 AT5G52200 122 / 5e-35 inhibitor-2, phosphoprotein phosphatase inhibitors (.1.2) Lus10038872 [exp] 142 / 1e-42 AT5G52200 118 / 3e-33 inhibitor-2, phosphoprotein phosphatase inhibitors (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G140500 [exp] 172 / 4e-55 AT5G52200 123 / 9e-36 inhibitor-2, phosphoprotein phosphatase inhibitors (.1.2) Potri.012G138600 [exp] 144 / 4e-44 AT5G52200 137 / 2e-41 inhibitor-2, phosphoprotein phosphatase inhibitors (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04979 [flax] [poplar] IPP-2 Protein phosphatase inhibitor 2 (IPP-2)
Representative CDS sequence Show only first row Show all	>Lus10005751 pacid=23169834 polypeptide=Lus10005751 locus=Lus10005751.g ID=Lus10005751.BGIv1.0 annot-version=v1.0 ATGAAGGGAAGAAGGTCGCGTGTAAGATGGGATGAAGATAATTTGGGGGAGATTGAAGCAAATAAGCCTGTGAGACAAAAGATTACTGAACCTAAGACAC CATACCATCCAATGCTTGATGACGACGATGATGATGTTGATGGTACATTATCTCCTACTAAGGTTAGCTTTGATGAGCCTGTTAATGATGCAACACATGC TGAAAAGCTGCGAACTGCCTTAGACACTGTGGCTTCTTCATCAAGTGGGAACTCCAGCAAACGACCCACTGGCTGGACATCATCCGATGATGAAGCTGAC CCTATGGACCAAGATGATGAAGATTGTGAAACGGACAGGAAAGCTTATTTTAGTGAGCTCAGACGGCAACATTATGACGAGTTTCGGAAAGTGAAAGAAC TTCGACGCAAGGGTTCTCTCGTCGAGGATGAAGAGGCTGAGACAAACGGCAACGGCAAGTTAAAGAACGGTGGTGGCAGTTCATCTTCGTTAACTGCTGG CGTGAGGGATATCGACATTGAAGATGGTACTGCAACTTCGTCGAACCAATCTGCACCGCCACCACCCCCGGCTTATGGGTCTTAG
AA sequence Show only first row Show all	>Lus10005751 pacid=23169834 polypeptide=Lus10005751 locus=Lus10005751.g ID=Lus10005751.BGIv1.0 annot-version=v1.0 MKGRRSRVRWDEDNLGEIEANKPVRQKITEPKTPYHPMLDDDDDDVDGTLSPTKVSFDEPVNDATHAEKLRTALDTVASSSSGNSSKRPTGWTSSDDEAD PMDQDDEDCETDRKAYFSELRRQHYDEFRKVKELRRKGSLVEDEEAETNGNGKLKNGGGSSSSLTAGVRDIDIEDGTATSSNQSAPPPPPAYGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52200		AtI-2	inhibitor-2, phosphoprotein ph...		Lus10005751 [exp]	0	1
AT4G14965		ATMAPR4	membrane-associated progestero...		Lus10018026 [exp]	2.4	0.8561
AT1G08780		PFD4, PDF4, AIP...	PREFOLDIN 4, ABI3-interacting ...		Lus10021994 [exp]	5.3	0.8384
AT4G14110		FUS7, EMB143, C...	FUSCA 7, EMBRYO DEFECTIVE 143,...		Lus10005729 [exp]	6.9	0.8391
AT5G04910			unknown protein		Lus10008941 [exp]	7.1	0.8439
AT1G65650		UCH2	Peptidase C12, ubiquitin carbo...		Lus10042047 [exp]	7.4	0.8307
AT4G11950			Protein of unknown function (D...		Lus10006713 [exp]	7.5	0.8039
AT3G48660			Protein of unknown function (D...		Lus10011353 [exp]	8.2	0.8045
AT1G59600		ZCW7	ZCW7 (.1)		Lus10007745 [exp]	12.6	0.8010
AT1G01940			Cyclophilin-like peptidyl-prol...		Lus10009237 [exp]	16.0	0.8045
AT2G17240			unknown protein		Lus10043214 [exp]	17.7	0.7607

Compare expression of checked genes

Lus10005751 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.