Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62040 197 / 1e-64 BFT brother of FT and TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) AT5G03840 191 / 1e-62 TFL-1, TFL1 TERMINAL FLOWER 1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) AT2G27550 189 / 9e-62 ATC centroradialis (.1) AT1G65480 146 / 7e-45 FT FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) AT4G20370 139 / 7e-42 TSF TWIN SISTER OF FT, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) AT1G18100 125 / 2e-36 MFT, E12A11 MOTHER OF FT AND TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027442 [exp] 295 / 4e-103 AT5G62040 248 / 4e-85 brother of FT and TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Lus10020600 [exp] 194 / 2e-63 AT2G27550 263 / 3e-91 centroradialis (.1) Lus10004886 [exp] 193 / 3e-63 AT2G27550 267 / 2e-92 centroradialis (.1) Lus10021372 [exp] 190 / 7e-62 AT5G03840 267 / 1e-92 TERMINAL FLOWER 1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Lus10043385 [exp] 182 / 8e-59 AT2G27550 259 / 2e-89 centroradialis (.1) Lus10013532 [exp] 159 / 8e-50 AT1G65480 278 / 6e-97 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Lus10004452 [exp] 158 / 6e-47 AT1G65480 270 / 1e-90 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Lus10019541 [exp] 147 / 3e-45 AT2G27550 188 / 5e-62 centroradialis (.1) Lus10004884 [exp] 145 / 3e-44 AT2G27550 218 / 3e-73 centroradialis (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G165100 [exp] 205 / 4e-68 AT2G27550 293 / 7e-103 centroradialis (.1) Potri.004G203900 [exp] 198 / 3e-65 AT2G27550 286 / 4e-100 centroradialis (.1) Potri.015G141300 [exp] 172 / 2e-55 AT5G62040 217 / 1e-73 brother of FT and TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Potri.008G077700 [exp] 159 / 7e-50 AT1G65480 257 / 8e-89 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Potri.010G179700 [exp] 154 / 7e-48 AT1G65480 286 / 2e-100 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Potri.015G041000 [exp] 129 / 3e-38 AT1G18100 291 / 2e-102 MOTHER OF FT AND TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Potri.010G179900 [exp] 54 / 4e-10 AT1G65480 132 / 6e-41 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Potri.010G179801 [exp] 54 / 7e-10 AT1G65480 133 / 3e-41 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01161 [flax] [poplar] PBP Phosphatidylethanolamine-binding protein
Representative CDS sequence Show only first row Show all	>Lus10005753 pacid=23169824 polypeptide=Lus10005753 locus=Lus10005753.g ID=Lus10005753.BGIv1.0 annot-version=v1.0 ATGGCAAGAGGAGGAGGAGGGATGGATCCATTGGCAGTAGGAAGAGTGGTGGGGGAAGTAGTGGATGTGTTCATTCCAAGCGTGAGAATGAATGTCACTT ACAACTCCAACAAGCTTGTCTGCAATGGCCATGAGTTGATGCCGGCTCTCATCTCTTCCAAACCGCGTGTCGACATCTCCGGCGACGATTTGCGCTCTGC TTACACACTCGATGTGTACATGTCTCATTTTGTAAAGATCATGACCGATCCAGACTATCCAAGCCCTAGTGATCCTTACCTAAGAGAGCATCTTCACTGG ATGGTCACCGACATTCCGGGGACAACAGATGCTTCATTCGGGAAAGAGGTGGTGAGCTACGAGATTCCTCGGCCGGTGGTGGGGATCCACCGGTATGTGT TTGTACTGTTCAAGCAAGCGAGAGGGCGGCAGACGGTGAGGGCGCCGTCGTCATCAAGCAGGGACTGCTTCAACACACGGAGGTTCTCCGAGGAGAATGG GTTGGGTCTCCCCGTCGCCGCCGTCTATTTCAATGCCCAACGTGAAACCGCCGCCAGAAAACGCTAA
AA sequence Show only first row Show all	>Lus10005753 pacid=23169824 polypeptide=Lus10005753 locus=Lus10005753.g ID=Lus10005753.BGIv1.0 annot-version=v1.0 MARGGGGMDPLAVGRVVGEVVDVFIPSVRMNVTYNSNKLVCNGHELMPALISSKPRVDISGDDLRSAYTLDVYMSHFVKIMTDPDYPSPSDPYLREHLHW MVTDIPGTTDASFGKEVVSYEIPRPVVGIHRYVFVLFKQARGRQTVRAPSSSSRDCFNTRRFSEENGLGLPVAAVYFNAQRETAARKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62040		BFT	brother of FT and TFL1, PEBP (...		Lus10005753 [exp]	0	1
AT3G51990			Protein kinase superfamily pro...		Lus10015478 [exp]	3.2	0.7699
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10008522 [exp]	10.8	0.7009
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Lus10026515 [exp]	14.7	0.7752
AT3G18180			Glycosyltransferase family 61 ...		Lus10016707 [exp]	28.6	0.7256
AT1G59730		ATH7	thioredoxin H-type 7 (.1)		Lus10036696 [exp]	37.6	0.6927
AT4G14410	bHLH	bHLH104	basic Helix-Loop-Helix 104, ba...		Lus10021199 [exp]	58.7	0.6941
					Lus10029354 [exp]	77.2	0.6715
AT3G54880			unknown protein		Lus10013824 [exp]	78.5	0.6336
AT1G04170		EIF2 GAMMA, EIF...	eukaryotic translation initiat...		Lus10020312 [exp]	102.6	0.6522
AT5G47920			unknown protein		Lus10000281 [exp]	104.7	0.6583

Compare expression of checked genes

Lus10005753 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.