Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07270 679 / 0 XBAT33 XB3 ortholog 3 in Arabidopsis thaliana (.1) AT5G57740 417 / 2e-141 XBAT32 XB3 ortholog 2 in Arabidopsis thaliana (.1) AT2G28840 152 / 2e-40 XBAT31 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) AT5G02620 72 / 2e-13 ATANK1, ANK1 ankyrin-like1 (.1) AT5G20350 70 / 2e-12 TIP1 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT3G04710 70 / 2e-12 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) AT4G19150 67 / 4e-12 Ankyrin repeat family protein (.1.2) AT3G12360 67 / 1e-11 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT2G31820 67 / 2e-11 Ankyrin repeat family protein (.1) AT5G60070 64 / 9e-11 ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027441 [exp] 858 / 0 AT5G07270 719 / 0.0 XB3 ortholog 3 in Arabidopsis thaliana (.1) Lus10019974 [exp] 422 / 2e-143 AT5G57740 630 / 0.0 XB3 ortholog 2 in Arabidopsis thaliana (.1) Lus10015503 [exp] 417 / 2e-140 AT5G57740 614 / 0.0 XB3 ortholog 2 in Arabidopsis thaliana (.1) Lus10016561 [exp] 159 / 4e-43 AT2G28840 640 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Lus10040829 [exp] 117 / 1e-28 AT2G28840 546 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Lus10003260 [exp] 72 / 3e-13 AT3G04710 587 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Lus10006559 [exp] 70 / 2e-12 AT3G04710 581 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Lus10038108 [exp] 65 / 8e-11 AT5G20350 839 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Lus10015037 [exp] 64 / 2e-10 AT3G09550 849 / 0.0 Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G141400 [exp] 740 / 0 AT5G07270 795 / 0.0 XB3 ortholog 3 in Arabidopsis thaliana (.1) Potri.012G139100 [exp] 730 / 0 AT5G07270 782 / 0.0 XB3 ortholog 3 in Arabidopsis thaliana (.1) Potri.006G176600 [exp] 428 / 5e-146 AT5G57740 597 / 0.0 XB3 ortholog 2 in Arabidopsis thaliana (.1) Potri.018G098400 [exp] 428 / 8e-146 AT5G57740 611 / 0.0 XB3 ortholog 2 in Arabidopsis thaliana (.1) Potri.001G238800 [exp] 160 / 1e-43 AT2G28840 657 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Potri.009G030000 [exp] 150 / 7e-40 AT2G28840 619 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Potri.018G042200 [exp] 71 / 6e-13 AT1G10340 268 / 6e-82 Ankyrin repeat family protein (.1.2) Potri.002G213200 [exp] 70 / 1e-12 AT2G03430 96 / 2e-22 Ankyrin repeat family protein (.1) Potri.010G185200 [exp] 69 / 3e-12 AT2G03430 76 / 3e-15 Ankyrin repeat family protein (.1) Potri.018G121200 [exp] 67 / 2e-11 AT5G20350 951 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10005754 pacid=23169829 polypeptide=Lus10005754 locus=Lus10005754.g ID=Lus10005754.BGIv1.0 annot-version=v1.0 ATGGGGAATTCGTTCGGATGCTCCGCCTCCGGCGAGAGGCTGGTATGGGCGGCAAGAGACGGCGATCTAGTGGAAGCCAAGATGCTCTTGGATTGCAATC CTTGCCTCGCCAAGTACTCCACCTTCGGCGGCCTCAACTCTCCTCTCCATTTCGCCGCCGCCAAAGGCCACAACGAGATTGTGGCGTTGTTGCTTGAAAA CGGAGCCGATGTCAATTCAAGGAATTACTGCGGCCAGACGGCATTGATGCAAGCTTGTAGATACGGACACTGGGAGGTTGTACAGACTCTTCTTCTGTTC AGATGTAATGTTACGAGAGCAGATTATCTCAGTGGAAGGACTGCTCTTCATTTTGCAGCTGTAAATGGACACGCGAGATGTCTGAGACTTGTTGTTTCGG ATTTTGTTCCTAGTGCTCCGTTCGATCTTGCAGAAAATGATGCGGGGAATTCTGCTGGTGTGAAGGCTAGCCAACTGTCCAAGTTTGTAAATAAGGCAGC TGATGGTGGCATAACTGCTCTTCATATGGCTGCATTGAACGGCTATTTCGACTGTGTACAGCTTCTACTCGACCTTCATGCAAATGTTTCGGCTGTGACG TTTCATTATGGAACAACGATGGATTTAATTGGAGCTGGAAGTACACCGTTGCATTATGCTGCTTGTGGGGGGAACTTAAAATGTTGTCAGGTTCTCCTTG CAAGACGTGCCAGTCGAATCTCATTGAATTGTAACGGGTGGCTACCCGTTGATGTGGCTAGGATGTGGGGTCGTCACTGGCTTGAACCGTTGCTGACACC GAATTCTGACTCTATCATTCCGCGATTCCCTCAATCTAGTTACTTATCCTTGCCCCTTCTAAGTGTGCTTAACATAGCAAGAGAGCATGGGATGCAATAC TCAACATCCTCTGACGATCCCGACACTTGTGCTGTTTGCCTAGAGAGACAGTGTAATGTGGCCGCTGAAGGATGTGGGCACGAGCTCTGCGTAAGATGTG CACTTTACCTCTGCTCGACGAGCAACATGCCAACCGAAATGTCCGGGCAACCCGGTTCAATCCCGTGTCCTCTCTGCAGGCATGGAATCGTCTCCTTCGT CAAATTACCAGGTTCCCCAGCAAGGGAACTCAAGCTCTCGATGTCCCTTAGCCTCTGTAACCCTTGCATTCTCCATCCTCGCAACGACCAGCCAGCATGT GTACCTGAGATTCGAAAGAACCGGGTGGCCTCAGTTTCTTCGGAGTACCTCTGCCCGGTGACTTGCAGCCCGTTCCCTTCCGTGGCGATGCCCTCTTGCA CCTGCAACAATGGCCCTTGCCCGTCGTTCGAACCCGAATCAGCCGAATCGGCAGGGGAATCCCCCCGTCGCTCGCAATCAGTTGTACCAGGGGATCGGGA TGATAAAGTGGAAGGGACGGGACTGGAGAATCAGAAGACGACATGTTCGAGCATATTTTGGAGCAGTAGAAGAAGCTGCAGCCGCGAACATCGATGCAAT TCCGAGATTAATGCTTGA
AA sequence Show only first row Show all	>Lus10005754 pacid=23169829 polypeptide=Lus10005754 locus=Lus10005754.g ID=Lus10005754.BGIv1.0 annot-version=v1.0 MGNSFGCSASGERLVWAARDGDLVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLF RCNVTRADYLSGRTALHFAAVNGHARCLRLVVSDFVPSAPFDLAENDAGNSAGVKASQLSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVT FHYGTTMDLIGAGSTPLHYAACGGNLKCCQVLLARRASRISLNCNGWLPVDVARMWGRHWLEPLLTPNSDSIIPRFPQSSYLSLPLLSVLNIAREHGMQY STSSDDPDTCAVCLERQCNVAAEGCGHELCVRCALYLCSTSNMPTEMSGQPGSIPCPLCRHGIVSFVKLPGSPARELKLSMSLSLCNPCILHPRNDQPAC VPEIRKNRVASVSSEYLCPVTCSPFPSVAMPSCTCNNGPCPSFEPESAESAGESPRRSQSVVPGDRDDKVEGTGLENQKTTCSSIFWSSRRSCSREHRCN SEINA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07270		XBAT33	XB3 ortholog 3 in Arabidopsis ...		Lus10005754 [exp]	0	1
AT2G26510		PDE135	pigment defective embryo 135, ...		Lus10002787 [exp]	2.0	0.9143
AT1G54610			Protein kinase superfamily pro...		Lus10001715 [exp]	9.2	0.9001
AT2G36970			UDP-Glycosyltransferase superf...		Lus10021437 [exp]	11.4	0.8619
AT2G48110		MED33B, REF4	reduced epidermal fluorescence...		Lus10000663 [exp]	15.6	0.8610
AT3G06860		ATMFP2, ATMPF2,...	multifunctional protein 2 (.1)		Lus10006501 [exp]	21.9	0.8708
AT1G27980		DPL1, ATDPL1	dihydrosphingosine phosphate l...		Lus10011345 [exp]	24.3	0.9032
AT3G59660			C2 domain-containing protein /...		Lus10025600 [exp]	27.6	0.8902
AT1G52790			2-oxoglutarate (2OG) and Fe(II...		Lus10041281 [exp]	29.0	0.8367
AT4G27290			S-locus lectin protein kinase ...		Lus10014808 [exp]	30.0	0.8580
AT4G33430		SERK3, RKS10, E...	RECEPTOR KINASES LIKE SERK 10,...		Lus10020962 [exp]	33.6	0.8803

Compare expression of checked genes

Lus10005754 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.