Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33495 608 / 0 RPD1 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G45790 238 / 9e-74 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT1G06440 226 / 8e-70 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT1G79120 159 / 5e-44 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT4G01037 153 / 7e-41 AtWTF1 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT2G31290 144 / 3e-38 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT5G21970 142 / 2e-37 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT3G63090 140 / 3e-37 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G48040 138 / 2e-36 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT1G71850 136 / 2e-35 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027440 [exp] 837 / 0 AT4G33495 607 / 0.0 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10041673 [exp] 228 / 1e-69 AT1G06440 495 / 2e-175 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10005945 [exp] 146 / 2e-38 AT4G01037 582 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10029446 [exp] 146 / 2e-38 AT4G01037 588 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10003062 [exp] 144 / 2e-38 AT2G31290 558 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10016529 [exp] 144 / 2e-38 AT5G21970 561 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10034086 [exp] 140 / 4e-37 AT2G31290 559 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10000096 [exp] 139 / 1e-36 AT3G63090 561 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10000098 [exp] 138 / 3e-36 AT3G63090 557 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G141700 [exp] 640 / 0 AT4G33495 607 / 0.0 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G245100 [exp] 243 / 4e-76 AT1G06440 544 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.016G030300 [exp] 241 / 6e-75 AT5G45790 466 / 8e-163 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.002G244900 [exp] 207 / 1e-62 AT1G06440 503 / 7e-180 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.001G439100 [exp] 150 / 1e-40 AT1G79120 483 / 2e-170 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G169300 [exp] 152 / 2e-40 AT4G01037 586 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.005G191100 [exp] 150 / 2e-40 AT2G31290 575 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.002G220000 [exp] 145 / 7e-39 AT3G63090 499 / 7e-177 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.006G218100 [exp] 145 / 2e-38 AT5G21970 566 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.014G096800 [exp] 144 / 2e-37 AT4G01037 588 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11955 [flax] [poplar] PORR Plant organelle RNA recognition domain
Representative CDS sequence Show only first row Show all	>Lus10005755 pacid=23169843 polypeptide=Lus10005755 locus=Lus10005755.g ID=Lus10005755.BGIv1.0 annot-version=v1.0 ATGGCAGCAATCCCCGCACTCCTCCTCCGCCACTTCAAATCCACGGCCAGGAAACAGGTCCGTTACATGTCCCAATCCACCTCCATCCCCAAAAAGCAAG ACCGAGTCCGCGACCATGGCTACGATAACTACATGGAGGTCCAGAAGAAAACCAGGCGAGTCCTGAAGTTCCAATCCCTTATCCTCCCTCACCACAACCA GACCATCCCGATCTCCCGCCTCGACGGCCTCTCCCGCCGATTAGGCTTCAAGCAGTTCGAAGCCGGCGCATTCATCTTGAAGTTCCCTCACATCTTCGAA GTCTACGAGCATCCCGTCCAGCGAATCCTCTTCGTCCGCCTCACTCGCAAAGCACTGATTCAGATTCGGGAAGAGAAAGAAGCGCTCCTCGCTCAAATTC CAGAGGCAGTCGTCCGATTGAGGAAGCTGGTGATGATGTCCGGAACCGGTCGGATCCGATTGGAGCACGTCCGGGTCGCCAGGTCAGAATTCGGTTTACC TGATGATTTTGAATACTCAGTAGTACGAAAACACCCAGAGTATTTTAAACTCGTTGATGCTAGAGAGACTAGGAATAAGTACATTGAGCTTGTCGAACGT GATCCGAAGTTAACAGTATGTGCAATTGAGAAGATTAGGGAGAGAGAATACAGAACCAGAGGATTAGATGCGGAGGATTCTAGGTTTTCCTTCCTGATTG ATTTCCCTCCAGGGTTTAAGATAGGGAAGTACTACAGAATTGCAGTGTGGAAATGGCAGAGGGTGCCTTACTGGTCACCTTACGAGGACATTTCCGGGTA CGATATGAGGTCCATCGAGGCTCAGAAGAGGATGGAGAAGAGGGCTGTAGCGACGATTCACGAGCTGCTGTCGTTGACTGTCGAGAAGAAGATTACGCTG GAGAGGATCGCGCATTTTCGGATGGCGATGAGCTTGCCGAAGAAGCTGAAGGAGTTCTTGCTCCAGCATCAGGGGATATTCTACATCTCAACAAGAGGGA ATCAAGGGAAGCTGCATACTGTGTTTCTTAGGGAGGCGTATAGGAGAGGGGAGTTGGTGGAGCCGAATGAGTTGTATTTGGCTAGGAGGAAGCTTGGGGA ACTGGTTTTGATGAGTCCTAGGAAGGTTAGTTTCGACAGGGAGTTGGTTAGTTATAGGAGGGATGTAAATGAGTATGATGATGATAGGGAACGTGTTCGG AGAAGCAGGTATGTCGAAAATGAGGTTGGAGGTGATTGGGGTAAGGGTTTTGATGCGGAAAAGGAGGAGGTGGGTGATTTGATCTCCGATTTGGATAGCG ATGATGAGGATGGTGATTATACAGATAATGACAAAGAGGATGCTTGTTCAACTAAGTAA
AA sequence Show only first row Show all	>Lus10005755 pacid=23169843 polypeptide=Lus10005755 locus=Lus10005755.g ID=Lus10005755.BGIv1.0 annot-version=v1.0 MAAIPALLLRHFKSTARKQVRYMSQSTSIPKKQDRVRDHGYDNYMEVQKKTRRVLKFQSLILPHHNQTIPISRLDGLSRRLGFKQFEAGAFILKFPHIFE VYEHPVQRILFVRLTRKALIQIREEKEALLAQIPEAVVRLRKLVMMSGTGRIRLEHVRVARSEFGLPDDFEYSVVRKHPEYFKLVDARETRNKYIELVER DPKLTVCAIEKIREREYRTRGLDAEDSRFSFLIDFPPGFKIGKYYRIAVWKWQRVPYWSPYEDISGYDMRSIEAQKRMEKRAVATIHELLSLTVEKKITL ERIAHFRMAMSLPKKLKEFLLQHQGIFYISTRGNQGKLHTVFLREAYRRGELVEPNELYLARRKLGELVLMSPRKVSFDRELVSYRRDVNEYDDDRERVR RSRYVENEVGGDWGKGFDAEKEEVGDLISDLDSDDEDGDYTDNDKEDACSTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33495		RPD1	ROOT PRIMORDIUM DEFECTIVE 1, U...		Lus10005755 [exp]	0	1
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10008291 [exp]	5.5	0.9424
AT5G64530	NAC	ANAC104, XND1	Arabidopsis NAC domain contain...		Lus10010747 [exp]	10.6	0.9291
AT1G16350			Aldolase-type TIM barrel famil...		Lus10036443 [exp]	12.1	0.9347
AT3G61610			Galactose mutarotase-like supe...		Lus10003035 [exp]	13.0	0.9123
AT1G60010			unknown protein		Lus10030835 [exp]	15.2	0.9331
AT3G61610			Galactose mutarotase-like supe...		Lus10005147 [exp]	16.7	0.9090
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10004225 [exp]	17.3	0.9320
					Lus10035913 [exp]	18.5	0.9022
AT1G29680			Protein of unknown function (D...		Lus10005415 [exp]	19.9	0.9196
AT5G65110		ATACX2, ACX2	acyl-CoA oxidase 2 (.1.2)		Lus10024038 [exp]	21.4	0.9236

Compare expression of checked genes

Lus10005755 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.