Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61150 270 / 4e-83 HD HD-GL2-1, HDG1 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) AT4G00730 265 / 3e-81 HD AHDP, ANL2 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT5G52170 252 / 3e-77 HD HDG7 homeodomain GLABROUS 7 (.1) AT4G04890 235 / 2e-70 HD PDF2 protodermal factor 2 (.1) AT1G05230 234 / 3e-70 HD HDG2 homeodomain GLABROUS 2 (.1.2.3.4) AT4G21750 234 / 4e-70 HD ATML1 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT4G25530 199 / 2e-57 HD HDG6, FWA HOMEODOMAIN GLABROUS 6, FLOWERING WAGENINGEN (.1) AT1G17920 190 / 5e-54 HD HDG12 homeodomain GLABROUS 12 (.1) AT1G73360 189 / 9e-54 HD ATHDG11, HDG11, EDT1 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) AT2G32370 183 / 2e-51 HD HDG3 homeodomain GLABROUS 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027437 [exp] 425 / 5e-143 AT3G61150 715 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10005759 [exp] 422 / 5e-142 AT3G61150 706 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10005758 [exp] 272 / 9e-86 AT3G61150 419 / 3e-137 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10014997 [exp] 262 / 6e-81 AT4G00730 559 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10031933 [exp] 258 / 3e-80 AT3G61150 410 / 1e-133 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10036567 [exp] 244 / 1e-73 AT4G00730 979 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10039667 [exp] 235 / 9e-70 AT1G05230 1142 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Lus10027175 [exp] 231 / 3e-68 AT1G05230 1138 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Lus10025940 [exp] 226 / 5e-67 AT3G61150 504 / 1e-168 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G075200 [exp] 303 / 1e-95 AT4G00730 1045 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.002G154700 [exp] 303 / 2e-95 AT4G00730 1057 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.012G139300 [exp] 295 / 7e-93 AT4G00730 838 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.015G141800 [exp] 289 / 8e-91 AT4G00730 829 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.002G230200 [exp] 238 / 2e-71 AT1G05230 1159 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.014G152000 [exp] 236 / 7e-71 AT1G05230 1179 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.004G020400 [exp] 231 / 4e-69 AT4G04890 1185 / 0.0 protodermal factor 2 (.1) Potri.011G025000 [exp] 224 / 2e-66 AT4G21750 1164 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.001G184100 [exp] 203 / 2e-58 AT1G79840 946 / 0.0 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2) Potri.003G052400 [exp] 198 / 9e-57 AT1G79840 948 / 0.0 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF01852 [flax] [poplar] START START domain
Representative CDS sequence Show only first row Show all	>Lus10005756 pacid=23169841 polypeptide=Lus10005756 locus=Lus10005756.g ID=Lus10005756.BGIv1.0 annot-version=v1.0 ATGGTAAAAACTGATGAACCTCTATGGATGAAATATCCTGAACTTGGTGGTGGTAATATGGACGTGCTCAACCTCAAGGAGTATGCAAGAGTCGCTGCCC CTTCGCTCGCCCTGAAACGCGCTGGCTTTGTTACTGAGGGTTCGAGAGATACTGGGTTTGTCATGATCAACAGCTTTGTTCTTGTCGAAATGTTGATGGA TGTGAAGTGTTGGGTCGACACTTTCTCTGGGCTAGTTGCGAGGGGCTCCATCATTGAGATTATATCTAATGGATTTCATGGTAACAAAGATGGTAATTTG CAATTGATGCAAGCTGATTTCAAAGTGAAATCCCTCATGGTCCCTGTCCGACAAGCGAAGTTCCTCCGATTCTGCAAGCAGCACGGCAAGGGTCTTTGGA CTGTCATCGATGTGTCCCTCAACGAGAGGCAAGAGGGTTCTAGCTCGTGTTCTTTCCCCTCCAGCATGAGTCTTCCGTCTGGATGTGTCATACAGGACAT GCACAATGGTTACTGTAAGTTCACCAGATGTTGCGAGATTAGCTCCGGCATCGGTTTTGGTGCGAGAAGGTGGTTGTCCACTCTACAGAGGTACTGCAAA TGCTTGGACATCCTCACTACACCCTCCACCATGCTCGAAGACCCATCACTGATGACACTGGCGGGCAAAAAGAGCGTGTTGAGGCTAGCCCACAAGATGG TGGAGAACTTTTGCTCAGGACTTGTTAGCAATCGTAGTATTGGTTTCCCCAAGTGGGAGAAGGAGATGGTCAACAATAACATGAGCGAAGACTTGAAGTT TCGAATGAGGAAGAGCCTCGATGGGACCTCGGGAGTGGTGTTGGCAGCCCCGACTTCTCTCTGGCTCCCTGCCTCAAGGCAGAGATTGTTCGATTTCTTA AGCGATAGCCAGAATAGGAGGCATTGGGATATCCTGACTAATAGTGGGCCGATGGAGGAGATGTTTCGTTTCCCCAAGGCTCGGACTATTGGCAACTATA TATCTCTCCTTCGTGCAGCTGGTCATGCTGAGGTAGTCCGGGTAAGTGGATCCATCTTAACGATTGAGTTTCAAATCGTCGCCCATGACCACCCAATAAC CAAGTTGAACATGGAGTCTATATACGCGGTGAACAACAACTTGCTCTCGTGTACTATCAAGCATGTCAAGAACGCCCTCCAACTTGATAGTTGA
AA sequence Show only first row Show all	>Lus10005756 pacid=23169841 polypeptide=Lus10005756 locus=Lus10005756.g ID=Lus10005756.BGIv1.0 annot-version=v1.0 MVKTDEPLWMKYPELGGGNMDVLNLKEYARVAAPSLALKRAGFVTEGSRDTGFVMINSFVLVEMLMDVKCWVDTFSGLVARGSIIEIISNGFHGNKDGNL QLMQADFKVKSLMVPVRQAKFLRFCKQHGKGLWTVIDVSLNERQEGSSSCSFPSSMSLPSGCVIQDMHNGYCKFTRCCEISSGIGFGARRWLSTLQRYCK CLDILTTPSTMLEDPSLMTLAGKKSVLRLAHKMVENFCSGLVSNRSIGFPKWEKEMVNNNMSEDLKFRMRKSLDGTSGVVLAAPTSLWLPASRQRLFDFL SDSQNRRHWDILTNSGPMEEMFRFPKARTIGNYISLLRAAGHAEVVRVSGSILTIEFQIVAHDHPITKLNMESIYAVNNNLLSCTIKHVKNALQLDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61150	HD	HD-GL2-1, HDG1	HOMEODOMAIN-GLABRA2 1, homeodo...		Lus10005756 [exp]	0	1

Compare expression of checked genes

Lus10005756 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.