Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00730 155 / 3e-44 HD AHDP, ANL2 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT3G61150 155 / 1e-43 HD HD-GL2-1, HDG1 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) AT4G04890 139 / 4e-38 HD PDF2 protodermal factor 2 (.1) AT4G21750 134 / 2e-36 HD ATML1 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT5G52170 134 / 2e-36 HD HDG7 homeodomain GLABROUS 7 (.1) AT1G73360 131 / 3e-35 HD ATHDG11, HDG11, EDT1 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) AT1G05230 128 / 5e-34 HD HDG2 homeodomain GLABROUS 2 (.1.2.3.4) AT1G17920 119 / 8e-31 HD HDG12 homeodomain GLABROUS 12 (.1) AT5G46880 116 / 7e-30 HD HDG5, HB-7 HOMEODOMAIN GLABROUS 5, homeobox-7 (.1) AT2G32370 101 / 9e-25 HD HDG3 homeodomain GLABROUS 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027437 [exp] 215 / 2e-65 AT3G61150 715 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10005759 [exp] 206 / 4e-62 AT3G61150 706 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10036567 [exp] 164 / 9e-47 AT4G00730 979 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10041362 [exp] 147 / 2e-41 AT4G00730 379 / 2e-122 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10018360 [exp] 140 / 2e-41 AT1G05230 299 / 4e-97 homeodomain GLABROUS 2 (.1.2.3.4) Lus10038877 [exp] 139 / 9e-40 AT4G00730 261 / 6e-83 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10007650 [exp] 141 / 1e-38 AT4G04890 1121 / 0.0 protodermal factor 2 (.1) Lus10027175 [exp] 141 / 1e-38 AT1G05230 1138 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Lus10039667 [exp] 140 / 4e-38 AT1G05230 1142 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G141800 [exp] 174 / 1e-50 AT4G00730 829 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.012G139300 [exp] 167 / 6e-48 AT4G00730 838 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.014G075200 [exp] 166 / 2e-47 AT4G00730 1045 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.002G154700 [exp] 161 / 1e-45 AT4G00730 1057 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.004G020400 [exp] 152 / 9e-43 AT4G04890 1185 / 0.0 protodermal factor 2 (.1) Potri.014G152000 [exp] 144 / 7e-40 AT1G05230 1179 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.002G230200 [exp] 144 / 1e-39 AT1G05230 1159 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.011G025000 [exp] 142 / 5e-39 AT4G21750 1164 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.015G034100 [exp] 138 / 1e-37 AT1G73360 927 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Potri.012G038500 [exp] 130 / 8e-35 AT1G73360 920 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10005757 pacid=23169814 polypeptide=Lus10005757 locus=Lus10005757.g ID=Lus10005757.BGIv1.0 annot-version=v1.0 ATGGAGGGCCAATCTTTTGCTGAAGAACAACAACATCCGAGAAAGAAAAATTACAAGCGCCATTCTCCCTCCCAAATCCTTGAGCTTGAGAAAGCTTTCA AAGAGTGCTCTCGTCCAGATAAAGAGCAAAGGCTAAAGCTTGGATTGGACACCAGTCAGGTTAAGTTTTGGTTCCAGAACCACCGCACCCAATTAAAGAC TCAAATGGAGAGGTATGAGACAGTGCTAATGAGTGAGGCCATTGAAAAGATCAAAGTTGAAAATGTTATGTTGAGCCAGTATTTGCAGAACCCACTCTGC CACAACTGTTGTGGTCCCGAGGTATTCGAACTCTTCTCGTTTGGGAAACAGCAGCTGCGAATCGAGAATGCTCGTCTCAAGGAAGAAATCGTTCGTGTTT GTTCCTTGGTCAAGAAGTACCTTGGCCGGCCTCTTTTGTCCTTTGTTCTTGCTTCCCCATATGCTCCTTCCAATTATGGTAAATATGGACCAACTACTTC AAATGTTGATATTGGGATTGACTTCTCTCATCCTTCCATTAAAGATGTTAACCGAAAAATGGTGGTACCGCCAACAAGTGGTGAAGAAGTGTCGAGTTTC GACAAGTCCATGTATGTTGATTTCTATGAATGA
AA sequence Show only first row Show all	>Lus10005757 pacid=23169814 polypeptide=Lus10005757 locus=Lus10005757.g ID=Lus10005757.BGIv1.0 annot-version=v1.0 MEGQSFAEEQQHPRKKNYKRHSPSQILELEKAFKECSRPDKEQRLKLGLDTSQVKFWFQNHRTQLKTQMERYETVLMSEAIEKIKVENVMLSQYLQNPLC HNCCGPEVFELFSFGKQQLRIENARLKEEIVRVCSLVKKYLGRPLLSFVLASPYAPSNYGKYGPTTSNVDIGIDFSHPSIKDVNRKMVVPPTSGEEVSSF DKSMYVDFYE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00730	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS...		Lus10005757 [exp]	0	1

Compare expression of checked genes

Lus10005757 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.