Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61150 372 / 4e-119 HD HD-GL2-1, HDG1 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) AT5G52170 353 / 2e-113 HD HDG7 homeodomain GLABROUS 7 (.1) AT4G00730 355 / 1e-112 HD AHDP, ANL2 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT4G04890 326 / 3e-102 HD PDF2 protodermal factor 2 (.1) AT4G21750 314 / 1e-97 HD ATML1 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT1G05230 302 / 2e-93 HD HDG2 homeodomain GLABROUS 2 (.1.2.3.4) AT4G25530 296 / 9e-92 HD HDG6, FWA HOMEODOMAIN GLABROUS 6, FLOWERING WAGENINGEN (.1) AT1G73360 259 / 3e-77 HD ATHDG11, HDG11, EDT1 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) AT1G17920 250 / 3e-74 HD HDG12 homeodomain GLABROUS 12 (.1) AT1G79840 238 / 3e-69 HD GL2 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027437 [exp] 477 / 2e-160 AT3G61150 715 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10005759 [exp] 466 / 3e-156 AT3G61150 706 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10031892 [exp] 404 / 1e-133 AT1G73360 618 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Lus10041362 [exp] 389 / 1e-128 AT4G00730 379 / 2e-122 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10031933 [exp] 325 / 1e-103 AT3G61150 410 / 1e-133 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10014997 [exp] 316 / 4e-99 AT4G00730 559 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10020059 [exp] 313 / 9e-98 AT4G21750 1130 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10018359 [exp] 304 / 1e-96 AT4G04890 805 / 0.0 protodermal factor 2 (.1) Lus10025940 [exp] 310 / 3e-96 AT3G61150 504 / 1e-168 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G154700 [exp] 389 / 1e-125 AT4G00730 1057 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.014G075200 [exp] 384 / 2e-123 AT4G00730 1045 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.012G139300 [exp] 366 / 1e-117 AT4G00730 838 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.015G141800 [exp] 355 / 4e-113 AT4G00730 829 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.004G020400 [exp] 314 / 6e-98 AT4G04890 1185 / 0.0 protodermal factor 2 (.1) Potri.011G025000 [exp] 312 / 3e-97 AT4G21750 1164 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.002G230200 [exp] 301 / 1e-92 AT1G05230 1159 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.014G152000 [exp] 300 / 4e-92 AT1G05230 1179 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.003G052400 [exp] 277 / 1e-83 AT1G79840 948 / 0.0 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2) Potri.015G034100 [exp] 275 / 2e-83 AT1G73360 927 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF01852 [flax] [poplar] START START domain CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10005758 pacid=23169822 polypeptide=Lus10005758 locus=Lus10005758.g ID=Lus10005758.BGIv1.0 annot-version=v1.0 ATGGGGAGGATAATTATTGGGGATCAATTTGTTGATGTTGACAGTTTGATGAGGAGGCTTAACAAGGAAGGTGAATATGGAGGCAACTCTACCAACTTCT TTGAAGGGAGTGGATCTGGTGATGATCAACTTGATGCTGAAGGACATCAACAATCCCATAAGAGGAAGAAGCACTATCGTCATACTCGGTTTCAGATCGA TGAGCTCGAGAAGTCATTCAATGAGTGCCCTCATCCCGATTACAAGGAAAGATTGGAGCTTAGCAGGAAACTTGGGTTGGAAACTAGGCAAGTCAAGTTC TGGTTCCAAAATCGACGCACTCATGTAAAGTCTCAATTGGAGAAGCATGAGAACATATTAATGAAGGAGGAGAATGAGAAATTGAGAGCTGAGAATGAGA TGATAAGGGAGGGTTTGAACGACCCACTCTGCATCAACTGTGGTGGTGGCAATGTGATTTCTGCAATGGTCTCGCTCGAGCAACAAAAGCTACAGATCAA GAATGCTCGTCTCAAGGAAGAATTCGATCGCGATCGTTGGGCCGAAACATTCTACGGTGTGGTTTCTAAGAGCTCCGTCATTGAAGTGATATCCGATGGA GTTGACGGGAGCAAAAATGGTACTTTGCAATGGATGCAAGCTGATTTCCAAGTGATTTCCACTATGGTTCCCGCCCGACAAGAAAGATTCCTCCGATTCT GCAAAAAGCACGGAGAGGATATTTGGGCTGTCGTTGATGTGTCCTTTGAAGGGATCCAAGAAGTTTCAAGCTCGTCCTCATTCCCTACCAGCATGAGGCG TCCTTCTGGTTGTTTCATACAGGACATGCCTAATGGTTACTCAAAGGTAACTTGGGTGGAACACTCCGAATATGATGAAACTTCAATTCACCCGATGTTG CGGCCGGTGATTAGTTCCGGCATAGGTTTTGGTTCCAAAAGGTGGTTGTCCACTCTACAAAGATACTGTGAATTCTTGAACATCCTCATGGCATCTTTCG ACATGCTCAACGACCCAATATTGACAAAAAAGAAGACCGTATTGAGGATGGCTAAAAGGATGGTGGACAACTTCTGCTCTGCGGTAGTTAGTAACGGTGA TGAAAAATGGGAGAAGCTCACTGTCAACAATGAGAGCGAGGGCGTGAAGATTCTGGCAAGGAAGAGCCTTACTGGGATCGGCGAGGTCTCGGGGTTCGTG TTGGGAGCCTCAACGTCTGTGTGGTTACCTTTCTCGAGGCAGAGGTTGTTTAATTTTCTCAACGAAAACTCGGCGAGTTGGGATATCGTGACCAAAGATG GGAAAATGGAAGAGATCTTTCGTATCCCCAAGGCTCATGCTCCTGGCAACAATATCTCTCTCCTTCGTGGTGTTAATCTTGATGATCATACGTCCCATGA CGCCAACCAGATGGCCGTACTCCAGGAATCGTGGCACGATGCTTCAGGGTCGTTGGTGGTGTACGCACCGGTGAGTGTAGCATCGATGGAGATGGTGATG AAGGGTGGAGGTAGCACCTCTATTGGTCTCCTGCCATCCGGGTATGCTATTCTCCCAGATGGGGTTCACCAACAAAACTATCCTATAGCCACTACTGAAG GCGACGGTCATGGTGGGGTGGTCGAGGCAGGTGGATCCATCCTAACGATTGGATTTCAAATCCTTGTCAACACCCTTCCTACGACCAACTTGACCAAGGA GTCGGTGGACACAGTGAACAACTTGCTCTCGTGTACTATCCAGCGCATCAAGGACGCCCTCCAGAAGGTGACTTGA
AA sequence Show only first row Show all	>Lus10005758 pacid=23169822 polypeptide=Lus10005758 locus=Lus10005758.g ID=Lus10005758.BGIv1.0 annot-version=v1.0 MGRIIIGDQFVDVDSLMRRLNKEGEYGGNSTNFFEGSGSGDDQLDAEGHQQSHKRKKHYRHTRFQIDELEKSFNECPHPDYKERLELSRKLGLETRQVKF WFQNRRTHVKSQLEKHENILMKEENEKLRAENEMIREGLNDPLCINCGGGNVISAMVSLEQQKLQIKNARLKEEFDRDRWAETFYGVVSKSSVIEVISDG VDGSKNGTLQWMQADFQVISTMVPARQERFLRFCKKHGEDIWAVVDVSFEGIQEVSSSSSFPTSMRRPSGCFIQDMPNGYSKVTWVEHSEYDETSIHPML RPVISSGIGFGSKRWLSTLQRYCEFLNILMASFDMLNDPILTKKKTVLRMAKRMVDNFCSAVVSNGDEKWEKLTVNNESEGVKILARKSLTGIGEVSGFV LGASTSVWLPFSRQRLFNFLNENSASWDIVTKDGKMEEIFRIPKAHAPGNNISLLRGVNLDDHTSHDANQMAVLQESWHDASGSLVVYAPVSVASMEMVM KGGGSTSIGLLPSGYAILPDGVHQQNYPIATTEGDGHGGVVEAGGSILTIGFQILVNTLPTTNLTKESVDTVNNLLSCTIQRIKDALQKVT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61150	HD	HD-GL2-1, HDG1	HOMEODOMAIN-GLABRA2 1, homeodo...		Lus10005758 [exp]	0	1
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10042691 [exp]	1.4	0.7698
AT1G70530		CRK3	cysteine-rich RLK (RECEPTOR-li...		Lus10003274 [exp]	2.8	0.7408
AT5G28740			Tetratricopeptide repeat (TPR)...		Lus10003867 [exp]	3.7	0.6774
AT2G20710			Tetratricopeptide repeat (TPR)...		Lus10029335 [exp]	6.7	0.6860
AT5G45840			Leucine-rich repeat protein ki...		Lus10007281 [exp]	7.9	0.6998
					Lus10040835 [exp]	10.2	0.6908
AT4G35420		TKPR1, DRL1	tetraketide alpha-pyrone reduc...		Lus10006141 [exp]	13.0	0.6829
					Lus10009381 [exp]	23.3	0.6327
AT5G37150			P-loop containing nucleoside t...		Lus10035775 [exp]	24.0	0.5549
					Lus10030519 [exp]	24.2	0.5455

Compare expression of checked genes

Lus10005758 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.