Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07240 159 / 3e-44 IQD24 IQ-domain 24 (.1) AT5G62070 132 / 3e-34 IQD23 IQ-domain 23 (.1) AT4G23060 81 / 4e-16 IQD22 IQ-domain 22 (.1) AT1G01110 68 / 4e-12 IQD18 IQ-domain 18 (.1.2) AT4G00820 64 / 7e-11 IQD17 IQ-domain 17 (.1) AT1G17480 52 / 3e-07 IQD7 IQ-domain 7 (.1) AT1G72670 51 / 9e-07 IQD8 IQ-domain 8 (.1) AT3G52290 48 / 8e-06 IQD3 IQ-domain 3 (.1) AT3G49260 47 / 1e-05 IQD21 IQ-domain 21 (.1.2.3) AT5G03040 47 / 1e-05 IQD2 IQ-domain 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027435 [exp] 612 / 0 AT5G62070 207 / 3e-62 IQ-domain 23 (.1) Lus10017841 [exp] 76 / 1e-14 AT4G23060 258 / 2e-80 IQ-domain 22 (.1) Lus10024498 [exp] 69 / 1e-12 AT4G23060 195 / 4e-58 IQ-domain 22 (.1) Lus10041188 [exp] 61 / 1e-09 AT4G14750 288 / 2e-93 IQ-domain 19 (.1) Lus10014870 [exp] 53 / 4e-07 AT2G26180 249 / 5e-74 IQ-domain 6 (.1) Lus10006613 [exp] 52 / 7e-07 AT4G14750 295 / 6e-96 IQ-domain 19 (.1) Lus10021904 [exp] 51 / 1e-06 AT4G14750 314 / 2e-103 IQ-domain 19 (.1) Lus10012608 [exp] 49 / 6e-06 AT1G01110 432 / 8e-147 IQ-domain 18 (.1.2) Lus10011131 [exp] 48 / 1e-05 AT3G16490 223 / 2e-68 IQ-domain 26 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G139800 [exp] 297 / 9e-97 AT5G07240 137 / 3e-36 IQ-domain 24 (.1) Potri.015G142200 [exp] 283 / 2e-91 AT5G07240 138 / 3e-36 IQ-domain 24 (.1) Potri.001G108800 [exp] 136 / 2e-35 AT4G23060 179 / 1e-50 IQ-domain 22 (.1) Potri.003G122800 [exp] 94 / 1e-20 AT4G23060 109 / 1e-25 IQ-domain 22 (.1) Potri.002G178500 [exp] 62 / 3e-10 AT4G00820 458 / 1e-156 IQ-domain 17 (.1) Potri.008G156700 [exp] 53 / 2e-07 AT4G14750 307 / 6e-101 IQ-domain 19 (.1) Potri.018G062001 [exp] 51 / 4e-07 AT2G26180 260 / 2e-85 IQ-domain 6 (.1) Potri.013G038901 [exp] 52 / 5e-07 AT4G14750 128 / 2e-33 IQ-domain 19 (.1) Potri.005G051500 [exp] 52 / 6e-07 AT4G14750 127 / 6e-33 IQ-domain 19 (.1) Potri.003G042700 [exp] 51 / 1e-06 AT1G72670 223 / 3e-68 IQ-domain 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif
Representative CDS sequence Show only first row Show all	>Lus10005760 pacid=23169811 polypeptide=Lus10005760 locus=Lus10005760.g ID=Lus10005760.BGIv1.0 annot-version=v1.0 ATGGGCTTCCTGCGGAGACTATTCGGATCGAAGAAACAGAGCAATTCCCAGTCCAACAATAACAGGAGGTGGAGCTTCGGTAGATCTCCTCCCGCTCACC GGCACCCTCCTCCGAACCACGAAGACGAACAGTACGCCGACGGATTGGATGCCAATAAGCACGCCATAGCAGTGGCCGCCGCCACTGCCGCGGTCGCTGA GGCTGCTCTGGCTGCTGCCCAGGCTGCCGCGGAGGTTGTCAGGCTTACAAGTGGCAGCGGCGGTGGGAGGAGTGTTGCATCGCCTCAGGTCTCCGGGAGC CACCGCCGGTACGCGGAGGCGGTTGCCGCGGTCAGGATTCAGTCCGCATTTCGTGGGTATCTGGCTAGGAGGGCTTTGAGAGCATTGAAAGCGCTGGTCA AACTTCAAGCATTGGTTAGAGGACACATTGTTAGGAAACAATCGGCTGATATGCTCCGGCGAATGCAAACCCTAGTTCGAGTACAGGCTCGAGCTCGTGC TAATCGAACTGTCCCCTCTGATCAGCCTCTCCATTCTTCCAGCAAGTTCTCCAATTTGCGATACAGCGGAACTCCTCAGAAGGACCACTTGCCTAGAGTT TATAGTGCTAATCCTAAACTCGATGGACCATCAAATCTCAAGAGATGCAGCTCGAATTCGAACATCAGGGACGTGGCAGAACTCGAGAAGGGGAAAACCG GTTCGAACTGGTTAGACCGATGGATGGAAGAGAGCCTATGGACAAACCACGTGGTCCTTAGCTCTCCACAGAAGATTCATCGAACTTCTGACGACGAGAA GACTGATGACAAGATACTCGAAGTAGACACTTGGAAGCCGCACATGAAAACTTTCGATTCCCCATCAAAGTGGTCGACAAGACCAACAAACATGATCCCG AACAATGTGTCCTTTAGAGAAGCATTGCCTAACTCTGCATCGTCAAGGCCTGGAAGTAGCGGTCGAAAAGGACAAGGTGCTGGTGGTCCGTTCACACCTA CAAGGAGCGAGACCTCGTGGGGATACTTCAACGGATACTCGAGCTACCCTAACTACATGGCCAACACTGAGTCATCGATAAACCGGTTTAGATCGCAGAG TGCACCGAGGCAAAGGGGGGTGGAGTTCGACAAATTGAGTTCGAGCAAGAGATCGTTGAAAGGTGTTTATGATTCGGACACCGTTTCGGAATGTGGGTTT GGTCAGCACACTGAGGTTAGGCACAAAGCTCATCCTGGAGGTGGACGCCTTAGTAGAGTAGGAAGTACCCGTTTAAGTTCATAA
AA sequence Show only first row Show all	>Lus10005760 pacid=23169811 polypeptide=Lus10005760 locus=Lus10005760.g ID=Lus10005760.BGIv1.0 annot-version=v1.0 MGFLRRLFGSKKQSNSQSNNNRRWSFGRSPPAHRHPPPNHEDEQYADGLDANKHAIAVAAATAAVAEAALAAAQAAAEVVRLTSGSGGGRSVASPQVSGS HRRYAEAVAAVRIQSAFRGYLARRALRALKALVKLQALVRGHIVRKQSADMLRRMQTLVRVQARARANRTVPSDQPLHSSSKFSNLRYSGTPQKDHLPRV YSANPKLDGPSNLKRCSSNSNIRDVAELEKGKTGSNWLDRWMEESLWTNHVVLSSPQKIHRTSDDEKTDDKILEVDTWKPHMKTFDSPSKWSTRPTNMIP NNVSFREALPNSASSRPGSSGRKGQGAGGPFTPTRSETSWGYFNGYSSYPNYMANTESSINRFRSQSAPRQRGVEFDKLSSSKRSLKGVYDSDTVSECGF GQHTEVRHKAHPGGGRLSRVGSTRLSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07240		IQD24	IQ-domain 24 (.1)		Lus10005760 [exp]	0	1
AT1G74860			unknown protein		Lus10036649 [exp]	2.0	0.7904
AT3G63150		ATCBG, MIRO2	CALCIUM BINDING GTP-ASE, MIRO-...		Lus10022034 [exp]	6.2	0.7102
AT5G45380		ATDUR3	DEGRADATION OF UREA 3, solute:...		Lus10037255 [exp]	9.3	0.7363
					Lus10024018 [exp]	10.2	0.6398
AT1G05500		SYT5, NTMCTYPE2...	synaptotagmin 5, ARABIDOPSIS T...		Lus10038117 [exp]	12.2	0.7093
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10034707 [exp]	13.3	0.6891
AT3G26730			RING/U-box superfamily protein...		Lus10031993 [exp]	13.6	0.7047
AT3G22550			Protein of unknown function (D...		Lus10025770 [exp]	24.0	0.6949
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10031976 [exp]	25.5	0.6796
AT5G26030		FC1, FC-I, ATFC...	ferrochelatase 1 (.1.2)		Lus10007924 [exp]	27.3	0.6284

Compare expression of checked genes

Lus10005760 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.