Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45750 797 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G00750 793 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G33170 733 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G10440 732 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G26850 683 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G18030 662 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G43200 581 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G31850 543 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G19120 515 / 8e-177 ERD3 early-responsive to dehydration 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G00740 480 / 2e-163 QUA3 QUASIMODO 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010152 [exp] 745 / 0 AT1G33170 952 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10017357 [exp] 743 / 0 AT1G33170 948 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10008298 [exp] 735 / 0 AT4G10440 957 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10041366 [exp] 710 / 0 AT4G00750 784 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10003014 [exp] 683 / 0 AT4G18030 963 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10011045 [exp] 683 / 0 AT4G18030 963 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10030479 [exp] 666 / 0 AT1G26850 1057 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10012830 [exp] 665 / 0 AT1G26850 1056 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10036747 [exp] 659 / 0 AT1G26850 1042 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G139000 [exp] 890 / 0 AT2G45750 880 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.012G137300 [exp] 884 / 0 AT4G00750 874 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G154400 [exp] 794 / 0 AT4G00750 944 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.014G075700 [exp] 794 / 0 AT4G00750 955 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.011G147600 [exp] 756 / 0 AT1G33170 984 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G454300 [exp] 743 / 0 AT1G33170 961 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.003G087600 [exp] 695 / 0 AT4G18030 989 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G146400 [exp] 691 / 0 AT4G18030 1008 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G094100 [exp] 672 / 0 AT1G26850 1031 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.008G147800 [exp] 670 / 0 AT1G26850 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10005764 pacid=23169820 polypeptide=Lus10005764 locus=Lus10005764.g ID=Lus10005764.BGIv1.0 annot-version=v1.0 ATGGCCGGCGCTTCCACCGCTCCTTACCATCCAACTTCCAAACCTCACAAATCCTCCCCATTCTCAAATCTCCTCCCCAAACAAAACCCCCAAATCTACA CCCTCGCCGGAGTCCTCCTCCTCTGCCTCTCCTCCTACTTCCTCGGCTCCTTCCACCACCACCGCCGCACCCACATCCAAACCATCCCCTGCACCACCAC CGCCGCCGCCACCATCCTCGACTTCACCACCCACCACGAAGCCGCGGCAACGACTGCGGGGAACGATCAAAAGGTATACCCGCCCTGCTCGGCGAACTTC AGCGAGTACACGCCGTGTGAGGACCACAACCGGTCTCTGAGGTTCGACCGGCGGCGGCTGGCGTACAGGGAGCGCCACTGTCCGTCGTCGGCAGCGGAGG ACGGAGAGACCGTGAGGTGCCGAATCCCTCCGCCGTACGGATACAAGAACCCCTTCGCGTGGCCGGCGAGTAGGGACTACGCGTGGTTCGCGAACGTGCC GCACAAGCATCTGACCGTGGAGAAGGCGGTGCAGAATTGGATAATGTACGAGGGAGATAGGTTCCGGTTCCCCGGAGGCGGGACCATGTTCCCCAATGGT GCAGATAAATATATCGACGACATTGCGGAGCTGATTGACTTAACCGGTGGGTCCATTCGGACCGCCGTAGATACTGGTTGCGGGGTGGCAAGTTGGGGAG CGTATTTGATGTCACGTAACATTTTAACGATGTCGTTCGCACCAAGAGACACCCACGAAGCACAAGTACAGTTCGCACTTGAACGTGGAGTCCCGGCAAT GATCGGGGTATTAGCCACCAAGAGACTCCCTTACCCTTCAAGAGCATTCGACATGGCTCATTGCTCTCGCTGTCTCATCCCTTGGGCTGACTCGGAAGGG CAGTATCTGATGGAAGTGGACAGGATCATACGGCCAGGAGGCTACTGGATCCTGTCCGGCCCACCAATCCGGTGGAAGGAATACTGGAAAGGTTGGGAGA GAACAAAAAAGGATTTGAAAGATGAACAAGATCGGATCGAAATTGTGGCTAAAAGTTTGTGCTGGAAGAAGTTTGTCGAAAAAGGTGACATTGCAATCTG GCAAAAACCGTTCAATCACAATAACTGTAAATCCACAAGTTCACAAATTCACCGTTTCTGCCCTGCTTCCCAAGACCCTGACAGAGCATGGTACACAAAA TTGGAAACGTGTGTAACAAACCTGCCAGAGGTATCTGACGACAAACGAGTGGCCGGAGGCAAGCTCCCCGATTGGCCACAGAGATTAAACTCGGTCCCTC CGAGGATCAGGCGAGGAACGATTAATGGCGTAACCGCCAAGAGTTTCAAGGAGGACAATGAGCTGTGGCAAAACAGAGTGTCGTACTACAAAACTGTGAA TAACCAATTGGGTCAGGCTGGAAGGTACAGAAATCTATTGGACATGAACGCTCAACTCGGTGGGTTCGCTGCCGGTTTGGTTAACGACCCGGTTTGGGTC ATGAACGTTGTACCTGTCCACTCGGTCAACACTTTGGGAGCCATTTACGAGCGGGGACTCATCGGAACTTATCAAAACTGGTGTGAAGCAATGTCGACTT ATCCGAGGACTTATGATCTAATCCACGCTGATAGAGTGTTTACACTCTATGGAGACAGGTGCGAAATGGAGGAGATATTGCTGGAGATGGACAGGATAGT GAGGCCAGAAGGAAGCATAATCATAAGGGACGATGTTGATATGATAGTTAAGATTAAGAAAATAACAGATGGGCTGAAGTGGGAAAGTGTGGTTGTGAAT CATGAAGATGGAGCTTATCAAAGGGAGAAGCTTCTTTTTGCAGTCAAATCTTACTGGACTGCTCCTGCTGATTCTCAACTTTAG
AA sequence Show only first row Show all	>Lus10005764 pacid=23169820 polypeptide=Lus10005764 locus=Lus10005764.g ID=Lus10005764.BGIv1.0 annot-version=v1.0 MAGASTAPYHPTSKPHKSSPFSNLLPKQNPQIYTLAGVLLLCLSSYFLGSFHHHRRTHIQTIPCTTTAAATILDFTTHHEAAATTAGNDQKVYPPCSANF SEYTPCEDHNRSLRFDRRRLAYRERHCPSSAAEDGETVRCRIPPPYGYKNPFAWPASRDYAWFANVPHKHLTVEKAVQNWIMYEGDRFRFPGGGTMFPNG ADKYIDDIAELIDLTGGSIRTAVDTGCGVASWGAYLMSRNILTMSFAPRDTHEAQVQFALERGVPAMIGVLATKRLPYPSRAFDMAHCSRCLIPWADSEG QYLMEVDRIIRPGGYWILSGPPIRWKEYWKGWERTKKDLKDEQDRIEIVAKSLCWKKFVEKGDIAIWQKPFNHNNCKSTSSQIHRFCPASQDPDRAWYTK LETCVTNLPEVSDDKRVAGGKLPDWPQRLNSVPPRIRRGTINGVTAKSFKEDNELWQNRVSYYKTVNNQLGQAGRYRNLLDMNAQLGGFAAGLVNDPVWV MNVVPVHSVNTLGAIYERGLIGTYQNWCEAMSTYPRTYDLIHADRVFTLYGDRCEMEEILLEMDRIVRPEGSIIIRDDVDMIVKIKKITDGLKWESVVVN HEDGAYQREKLLFAVKSYWTAPADSQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45750			S-adenosyl-L-methionine-depend...		Lus10005764 [exp]	0	1
AT4G14640		CAM8, AtCML8	calmodulin-like 8, calmodulin ...		Lus10004088 [exp]	4.2	0.8909
AT5G39820	NAC	ANAC094	NAC domain containing protein ...		Lus10037178 [exp]	5.1	0.9053
AT1G80100		AHP6	histidine phosphotransfer prot...		Lus10023127 [exp]	6.3	0.8689
AT1G75710	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10024333 [exp]	6.6	0.8856
AT1G79580	NAC	ANAC033, SMB, N...	NAC (No Apical Meristem) domai...		Lus10030143 [exp]	8.5	0.8695
AT2G12646			PLATZ transcription factor fam...		Lus10039989 [exp]	9.5	0.8944
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Lus10008259 [exp]	11.7	0.8268
AT4G01240			S-adenosyl-L-methionine-depend...		Lus10035135 [exp]	15.7	0.8846
AT5G42630	GARP	KAN4, KANADI4, ...	KANADI 4, ABERRANT TESTA SHAPE...		Lus10032746 [exp]	19.0	0.8725
AT1G01180			S-adenosyl-L-methionine-depend...		Lus10010109 [exp]	21.9	0.8318

Compare expression of checked genes

Lus10005764 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.