Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45560 360 / 3e-119 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT3G52970 357 / 3e-118 CYP76G1 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) AT2G45550 357 / 4e-118 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT3G61040 350 / 2e-115 CYP76C7 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) AT2G45570 347 / 2e-114 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) AT1G33720 346 / 5e-114 CYP76C6 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) AT5G07990 338 / 5e-111 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT2G45580 313 / 3e-101 CYP76C3 "cytochrome P450, family 76, subfamily C, polypeptide 3", cytochrome P450, family 76, subfamily C, polypeptide 3 (.1) AT4G12320 307 / 9e-99 CYP706A6 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) AT4G12300 300 / 5e-96 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027431 [exp] 894 / 0 AT2G45560 379 / 1e-126 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Lus10027425 [exp] 503 / 2e-175 AT3G61040 352 / 1e-116 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) Lus10027428 [exp] 481 / 5e-167 AT2G45560 360 / 2e-119 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Lus10005766 [exp] 471 / 1e-162 AT3G61040 352 / 2e-116 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) Lus10027429 [exp] 459 / 5e-158 AT2G45570 351 / 6e-116 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) Lus10027426 [exp] 452 / 2e-155 AT2G45570 334 / 2e-109 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) Lus10040353 [exp] 440 / 9e-151 AT2G45570 350 / 1e-115 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) Lus10005767 [exp] 428 / 7e-146 AT2G45550 338 / 1e-110 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10006323 [exp] 415 / 8e-141 AT1G33720 371 / 1e-123 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G138900 [exp] 577 / 0 AT1G33720 359 / 6e-119 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) Potri.012G137200 [exp] 564 / 0 AT2G45550 374 / 1e-124 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.012G136800 [exp] 474 / 7e-164 AT2G45560 370 / 2e-123 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Potri.012G136600 [exp] 472 / 4e-163 AT2G45560 360 / 3e-119 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Potri.001G109300 [exp] 462 / 2e-159 AT1G33720 363 / 1e-120 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) Potri.001G025200 [exp] 413 / 3e-140 AT2G45550 322 / 2e-104 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.003G118200 [exp] 363 / 2e-120 AT2G45550 438 / 9e-150 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.001G113900 [exp] 352 / 2e-116 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150100 [exp] 344 / 2e-113 AT2G45550 510 / 3e-178 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.005G029200 [exp] 334 / 3e-109 AT3G52970 615 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10005765 pacid=23169823 polypeptide=Lus10005765 locus=Lus10005765.g ID=Lus10005765.BGIv1.0 annot-version=v1.0 ATGGACCCTTCAATGTATAATGCCTTCTTTTTCTTCTTCCTCCCACTTCTCCTTCTTCTTCTCCTTTCAATCACTAAAAGCAAGAAGCTTCATCTTCCTC CGGGACCAAAACCATGGCCGATCCTCGGAAACCTGCCGCAGACGCTCAATTCCAAGAGTCTCCACGTCACATTTTCGAAATTCTCCCAATCCCACGGCCC ACTCATCTCCCTAAAGCTCGGCACCCAATTAGTCATCGTCGCCTCATCCCCCACGTCAGCATCCCAAATCCTGAAAACCCACGACAAAATCTTCTCGGGG CGTTACCAATCCAAAGCCAGCCCATTGGAGCCCGGTTTCCTCGACCGCGCAGCAATTGTCTGGGCACCCACGTGCACAGACGATTGGAAATGCCTCCGCA CCTTGTGCCGGACTGAGCTTTTTTCACCCAAAGCAATCGAGGCCCAGTCCGTCGTCAGGGAAAAGAAAGTGGGAGAAATGGTAACATACCTGTTGAAACA CGATGGTGGAAGGGTAAACGTTGGGGAAATTGTGTTCATCATCGTTTTCAACTCCCTCTCTAATGTTTTCTTCTCCCGAGATTTGTTGAGTTTAGAGGAA GGAGATGACGAAAACGAGTTGAAGAGTCATGTTAGGAAAATGATGGAGCTTGGAATTACTCCGAATGTGGCCGATTTTTACCCGTTTTTGGCGAGGTTTG ACCCTCAAGGTATGAAGAAAAAAATGATGGATGCCTTGAACAAAATGTTCTCCCTTTGGGTATCCTACGTCAAGGAAAGAAGGGAAATCCGCAAATCGGG ATCCGATGGTGGAGATTTCACCAAGGGCGATTTCTTGGATGTCTTTCTCGACAATGGATTTGATGATGACAAGATCAATTGGTTGTTCATGGAGTTGTTA GCCGCAGGAACAGATACAACCACAACCACGATAGAATGGGCGATGGCAGAACTACTCAAGAACAAAGAAGCAATGTCGAAACTCCGCGAAGAGTTAACCA GAGAAATCGGCATCACAAACTCGATAACCGAATCGAACACATCGCAACTACCGTTTATGAACGCCTGCATAAAGGAGACGCTACGACTACACCCGCCGGT CCCATTCCTAATCCCGCATCGAGCTCAAGAAACTTGTGAGGTGATGAATTACACGATACCGAAGGATTGTCAAGTCATGGTCAACCTATGGGCAATAGGG CGGGATCCGACGGTCTGGGTCGACCCATTGTCTTTTAAACCTGAGCGGTTCATGGACGGGTCAACCAATGCAGACTACAAAGGAAGGGATTTCGAGTTGA TCACGTTCGGGTCGGGTCGGAGGATGTGCCCAGGGTTACCCATGGCGGTTAAGCAATTGCCGTTGATTTTGGCTTCTTTGGTGAAGGGGTTTGATTGGAG TCTTCCTGGGGGCCAGGACCCAGCCAAACTAGACATGGGGGAGAAGTTTGGACTAACGTTGCAGAAAGATGAGCCATTGATTCTTGTGGTGGATAGGCAA CGAATGTGA
AA sequence Show only first row Show all	>Lus10005765 pacid=23169823 polypeptide=Lus10005765 locus=Lus10005765.g ID=Lus10005765.BGIv1.0 annot-version=v1.0 MDPSMYNAFFFFFLPLLLLLLLSITKSKKLHLPPGPKPWPILGNLPQTLNSKSLHVTFSKFSQSHGPLISLKLGTQLVIVASSPTSASQILKTHDKIFSG RYQSKASPLEPGFLDRAAIVWAPTCTDDWKCLRTLCRTELFSPKAIEAQSVVREKKVGEMVTYLLKHDGGRVNVGEIVFIIVFNSLSNVFFSRDLLSLEE GDDENELKSHVRKMMELGITPNVADFYPFLARFDPQGMKKKMMDALNKMFSLWVSYVKERREIRKSGSDGGDFTKGDFLDVFLDNGFDDDKINWLFMELL AAGTDTTTTTIEWAMAELLKNKEAMSKLREELTREIGITNSITESNTSQLPFMNACIKETLRLHPPVPFLIPHRAQETCEVMNYTIPKDCQVMVNLWAIG RDPTVWVDPLSFKPERFMDGSTNADYKGRDFELITFGSGRRMCPGLPMAVKQLPLILASLVKGFDWSLPGGQDPAKLDMGEKFGLTLQKDEPLILVVDRQ RM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10005765 [exp]	0	1
AT3G45070			P-loop containing nucleoside t...		Lus10033719 [exp]	1.0	0.9126
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Lus10039649 [exp]	2.0	0.8928
AT3G21670			Major facilitator superfamily ...		Lus10030006 [exp]	2.4	0.9015
AT5G13630		ABAR, CHLH, CCH...	ABA-BINDING PROTEIN, magnesium...		Lus10018068 [exp]	3.2	0.9070
AT4G27290			S-locus lectin protein kinase ...		Lus10014812 [exp]	4.1	0.8379
AT5G13630		ABAR, CHLH, CCH...	ABA-BINDING PROTEIN, magnesium...		Lus10018069 [exp]	7.7	0.8775
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10006759 [exp]	8.4	0.8694
AT1G62510			Bifunctional inhibitor/lipid-t...		Lus10041036 [exp]	9.5	0.8708
AT5G13630		ABAR, CHLH, CCH...	ABA-BINDING PROTEIN, magnesium...		Lus10018067 [exp]	9.5	0.8607
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10018501 [exp]	9.5	0.8416

Compare expression of checked genes

Lus10005765 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.