Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61040 329 / 1e-107 CYP76C7 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) AT2G45570 327 / 2e-106 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) AT2G45550 322 / 9e-105 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT1G33720 321 / 3e-104 CYP76C6 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) AT2G45560 311 / 2e-100 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT3G52970 297 / 5e-95 CYP76G1 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) AT2G45580 296 / 9e-95 CYP76C3 "cytochrome P450, family 76, subfamily C, polypeptide 3", cytochrome P450, family 76, subfamily C, polypeptide 3 (.1) AT5G07990 269 / 4e-84 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT1G33730 263 / 1e-83 CYP76C5 "cytochrome P450, family 76, subfamily C, polypeptide 5", cytochrome P450, family 76, subfamily C, polypeptide 5 (.1) AT3G48300 251 / 1e-77 CYP71A23 "cytochrome P450, family 71, subfamily A, polypeptide 23", cytochrome P450, family 71, subfamily A, polypeptide 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027428 [exp] 822 / 0 AT2G45560 360 / 2e-119 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Lus10027425 [exp] 759 / 0 AT3G61040 352 / 1e-116 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) Lus10027429 [exp] 590 / 0 AT2G45570 351 / 6e-116 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) Lus10027426 [exp] 585 / 0 AT2G45570 334 / 2e-109 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) Lus10005767 [exp] 584 / 0 AT2G45550 338 / 1e-110 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10040353 [exp] 549 / 0 AT2G45570 350 / 1e-115 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) Lus10027430 [exp] 498 / 2e-174 AT2G45550 270 / 2e-85 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10005765 [exp] 457 / 2e-157 AT2G45550 374 / 9e-125 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10027431 [exp] 454 / 4e-156 AT2G45560 379 / 1e-126 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G138900 [exp] 510 / 3e-178 AT1G33720 359 / 6e-119 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) Potri.012G137200 [exp] 494 / 9e-172 AT2G45550 374 / 1e-124 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.001G109300 [exp] 424 / 2e-144 AT1G33720 363 / 1e-120 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) Potri.012G136800 [exp] 409 / 1e-138 AT2G45560 370 / 2e-123 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Potri.012G136600 [exp] 401 / 2e-135 AT2G45560 360 / 3e-119 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Potri.001G025200 [exp] 364 / 6e-121 AT2G45550 322 / 2e-104 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.001G113900 [exp] 322 / 6e-105 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.003G118200 [exp] 310 / 3e-100 AT2G45550 438 / 9e-150 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150100 [exp] 304 / 8e-98 AT2G45550 510 / 3e-178 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150200 [exp] 288 / 2e-91 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10005766 pacid=23169835 polypeptide=Lus10005766 locus=Lus10005766.g ID=Lus10005766.BGIv1.0 annot-version=v1.0 ATGGCCATCATCTATCTTCTACTCATCTTCCTCCTCCCACTCACCATCTTCCTCTTCATCACCACCGCCAAACCCAAGCCGCCATCGCCGCCGCTCCCGC CGGGGCCAAAACCATGGCCGATCATCGGCAACCTCCTCCATCTAACCAAGAAGCCACACATCTCTCTGAATTCCTTCTCCAAACTCCACGGCCCACTCAT CTCCCTCCGCCTCGGCTCTCAGCTTCTAGTCGTCGCATCTTCTCCCTCCGCGGCCGCCGAAATTTTGAAAACCCACGACCGCCTCCTCTCCGCTCGATTC GTCCCCAGAGTCGTCCCTTTCCCCATCTCCGAACTCGACCGTAAAGCGATCATCTGGGCGTCTAACTGCCACGAGAATTGGAAGACCTTCAGGTCCATTT TCAAAACCCAGCTCTTCTCCGCCAAGGCTGTTGAGACTCAGGCCGCAGTCAGGGAACGGAAGGCGGCGGAGATGGTGAACTTCATCAGAACAAAAATAGG GGAAGAAATCATCATCAGTGAAGTGGTGTTCACTGCTGTTTTCGATTCGCTGTCGAATCTCGCATTCTCCAGAGACTGTATCGGGTTCGAGGAAACTGCT ACAGCCGCGGAAGTGAAATCTCTAGTTTGGAGGATGTTGGAATTGGGGGCGGCTCCTAATTTGGCTGATTTCTTCCCTATTTTTGAGGAATTGGATCCTC AGGGATTAAGAAGGGAATCTGCTAAGAACATCGCAAAGTTCTTTTCCATTTGGCAGCCTTACTTGAAACAGAGGAGAGAAACTCTCCGGCATGATGAAGG AGATTTTCTTGATGTTTTCCTGCAAAATGAACTCGACGATGATCAAATCAATTGGTTAAATCTCGAATTGTTCGTAGCCGGGACTGATACAAACACGGCG ACAATAGAGTGGGCGATGGCAGAGCTGATAAAAAACAGAGGAGCAATGGACAAACTACATGACGAACTAAAAACAAAGTTCGCTTCAAATCATCAAAAGC CATCTGTACTAAAGGAAGCTGACGTGTACCAACTTCCGTACTTAACCGCAGTGATCAAAGAAGCGTTAAGGCTCCACCCGCCGGCTCCATTACTAGTGCC CCACCGCGCACCGGAGACTTTGCAAGTGATGAATTACACGATCCCCGAGGGAGCAAGGGTCACGGTGAATGTGTGGTCGATCGGGCGGGATTGTTCGATA TGGGGTGACGATGCTGCATTGTTTAGGCCGGAGAGGTTCGTGGGTTCGAATGTGGATTTTCGAGGACAGGATTTCGAGCTGTTGCCGTTCAGTGCGGGAA GGAGGATGTGTCCTGGGATGCCGTTGGCGGCCAGGCAAATTCCTTTGCTTTTGGCTAATTTGGTTTGGAACTTCGAGTGGTGTTTGCCCAACGAGGCGGA ATTGGACATGGAGGAGAAGTTCGGGATCACGTTGCAGAAGCAATCGCGGCTGGTTCTTGTTCCCCAGCCACGGAGTGCGATTAACGCTAAGCTTCAAGAA GTAGTTTAA
AA sequence Show only first row Show all	>Lus10005766 pacid=23169835 polypeptide=Lus10005766 locus=Lus10005766.g ID=Lus10005766.BGIv1.0 annot-version=v1.0 MAIIYLLLIFLLPLTIFLFITTAKPKPPSPPLPPGPKPWPIIGNLLHLTKKPHISLNSFSKLHGPLISLRLGSQLLVVASSPSAAAEILKTHDRLLSARF VPRVVPFPISELDRKAIIWASNCHENWKTFRSIFKTQLFSAKAVETQAAVRERKAAEMVNFIRTKIGEEIIISEVVFTAVFDSLSNLAFSRDCIGFEETA TAAEVKSLVWRMLELGAAPNLADFFPIFEELDPQGLRRESAKNIAKFFSIWQPYLKQRRETLRHDEGDFLDVFLQNELDDDQINWLNLELFVAGTDTNTA TIEWAMAELIKNRGAMDKLHDELKTKFASNHQKPSVLKEADVYQLPYLTAVIKEALRLHPPAPLLVPHRAPETLQVMNYTIPEGARVTVNVWSIGRDCSI WGDDAALFRPERFVGSNVDFRGQDFELLPFSAGRRMCPGMPLAARQIPLLLANLVWNFEWCLPNEAELDMEEKFGITLQKQSRLVLVPQPRSAINAKLQE VV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61040		CYP76C7	"cytochrome P450, family 76, s...		Lus10005766 [exp]	0	1
AT3G16510			Calcium-dependent lipid-bindin...		Lus10006523 [exp]	6.2	0.8002
AT5G42050			DCD (Development and Cell Deat...		Lus10023059 [exp]	9.3	0.8038
AT1G51680		AT4CL1, 4CL.1, ...	ARABIDOPSIS THALIANA 4-COUMARA...		Lus10026143 [exp]	17.2	0.8294
AT5G56980			unknown protein		Lus10014282 [exp]	24.7	0.7610
AT3G27880			Protein of unknown function (D...		Lus10032145 [exp]	24.9	0.7979
AT1G08315			ARM repeat superfamily protein...		Lus10008655 [exp]	27.1	0.7654
AT2G43020		ATPAO2	polyamine oxidase 2 (.1)		Lus10005021 [exp]	33.7	0.6609
AT3G43190		ATSUS4, SUS4	ARABIDOPSIS THALIANA SUCROSE S...		Lus10020506 [exp]	34.0	0.7824
AT1G13360			unknown protein		Lus10034310 [exp]	35.2	0.7556
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10029231 [exp]	42.4	0.7553

Compare expression of checked genes

Lus10005766 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.