Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45570 332 / 2e-108 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) AT2G45550 315 / 8e-102 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT1G33720 315 / 8e-102 CYP76C6 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) AT2G45560 305 / 5e-98 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT3G61040 295 / 2e-94 CYP76C7 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) AT2G45580 280 / 3e-88 CYP76C3 "cytochrome P450, family 76, subfamily C, polypeptide 3", cytochrome P450, family 76, subfamily C, polypeptide 3 (.1) AT3G52970 278 / 2e-87 CYP76G1 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) AT5G07990 262 / 2e-81 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT5G44620 261 / 5e-81 CYP706A3 "cytochrome P450, family 706, subfamily A, polypeptide 3", cytochrome P450, family 706, subfamily A, polypeptide 3 (.1) AT4G22710 261 / 7e-81 CYP706A2 "cytochrome P450, family 706, subfamily A, polypeptide 2", cytochrome P450, family 706, subfamily A, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027426 [exp] 687 / 0 AT2G45570 334 / 2e-109 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) Lus10027429 [exp] 673 / 0 AT2G45570 351 / 6e-116 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) Lus10027430 [exp] 660 / 0 AT2G45550 270 / 2e-85 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10040353 [exp] 613 / 0 AT2G45570 350 / 1e-115 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) Lus10005766 [exp] 593 / 0 AT3G61040 352 / 2e-116 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) Lus10027428 [exp] 590 / 0 AT2G45560 360 / 2e-119 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Lus10027425 [exp] 585 / 0 AT3G61040 352 / 1e-116 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) Lus10005765 [exp] 427 / 1e-145 AT2G45550 374 / 9e-125 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10027431 [exp] 409 / 1e-138 AT2G45560 379 / 1e-126 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G138900 [exp] 464 / 4e-160 AT1G33720 359 / 6e-119 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) Potri.012G137200 [exp] 455 / 1e-156 AT2G45550 374 / 1e-124 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.012G136800 [exp] 404 / 1e-136 AT2G45560 370 / 2e-123 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Potri.012G136600 [exp] 392 / 6e-132 AT2G45560 360 / 3e-119 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Potri.001G109300 [exp] 389 / 7e-131 AT1G33720 363 / 1e-120 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) Potri.001G025200 [exp] 361 / 8e-120 AT2G45550 322 / 2e-104 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150100 [exp] 315 / 4e-102 AT2G45550 510 / 3e-178 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.001G113900 [exp] 305 / 2e-98 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150200 [exp] 297 / 5e-95 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150400 [exp] 295 / 2e-94 AT2G45550 495 / 2e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10005767 pacid=23169826 polypeptide=Lus10005767 locus=Lus10005767.g ID=Lus10005767.BGIv1.0 annot-version=v1.0 ATGGCCATCTTTCTATTTCTGCTGCTTCCACTCATCCTCACCATCGTCATCTACACCACCACTTCCAAAACCCGGCCACCATCGCCCCCGTTACCACCGG GACCGAAACCATGGCCAATCATCGGAAACCTCCTACACCTAACCCAAAATAACCATCACGTCTCTCTCCAATCCATGTCTAAACTCTACGGCCCACTCAT CTCCCTACGCCTCGGCTCACAGCTCTTGATCGTTGGCTCTTCTCGCGCAGCGGCTATCGAAATCCTCAAAACCCACGACGATGTCCTCTCCGGCCGATTC GTCCCGAAAGCTATCCCTTACGACGGCCAGGACTTAGATCATATGACCATCATGTGGGCTTCCAGTTGCCACGACAATTGGAAGTCATTCAGAAGCATTT TCAAAACCAGACTCTTCTCATCAAAGGCAATGGAATCCCAATCTGCCCTTAGGGAGCGGAAAACTGCGGAGATGGTGGATTTCGTCCGTAGCAGAGTCGG GGAGGAAATCGACATAGGCAAAGTAGTTTGCGCTTTTGTTTTGAGTTCGCTGTTCAAAATCATGTTCTCGATAGAATGCATAGGGTTTGAAGCGACGGAG GAGATACAATCGGTGGTCAGGAAGCTGCTGGAATTGGTGGCGGCTCCTAATGTCGTCGATATTTTCCCAATTTTGGAGAATTTGGATCCTCAGGGCTTGA GAAGGGCAGTCTTGAGATGTGGCAAGGAATTGTCTTCGGTTTGGAAGCCTTCCGTGAATCAGAGAAGAGAAAGTCTCCGGCGAGGGGAAAATACTGTGGC CGATCGAGCTGAGGATTTTCTTGATGTCTTTCTAGAAATTGGACTCGACGATGAACAAATCGATTGGTTGGGTCAGGACTTAGTCGTCGGCGGAACGGAT ACAGTTACGGCAACCATAGAGTGGGCGATGGCGGAGCTGATGAGAAACAAAGGAGTAATGAACAAGCTACGCGAGGAATTGAAAACAGAGTTTTCGAACG AAAAGCCATTGAATGAATCTGACATCTATTATCACCTCCCGTACTTGACTGCAATCGTGAAAGAAACGTTGAGGCTACACCCGCCGGCTCCTTTACTAGG TCCGCACCGGTCGCTACAGACTCTAAAAGTGATGAATTACACGATCCCCGAGGGTGCCATGGTCGCCGTCAACGTATGGGCAATTGCGCGTGATCGTTCA ATATGGGGGGACGATGCGGAGTCGTTTAAGCCGGAGAGGTTCATGGGTTCGAAGGTGGATTTTCGAGGGCTAGATTTCGAGTTGTTGCCGTTTGGTGCAG GGAGGAGGATGTGTCCTGCGATCCCGTCGGCTGCAAGGCAGGTCCCTCTGCTTTTGGCTAATTTGGTTTGGAACTTCGATTGGTGCTTGCCGGACGGAGT GGATTCAGCGGCAGAGTTGGATATGAAGGAGAAGTTTGGGCTCAGTTCACACAAGGAGCGGCCGCTGATTCTTGTTCCTCGTCCGAGTTCTATATTGCAA AACTGA
AA sequence Show only first row Show all	>Lus10005767 pacid=23169826 polypeptide=Lus10005767 locus=Lus10005767.g ID=Lus10005767.BGIv1.0 annot-version=v1.0 MAIFLFLLLPLILTIVIYTTTSKTRPPSPPLPPGPKPWPIIGNLLHLTQNNHHVSLQSMSKLYGPLISLRLGSQLLIVGSSRAAAIEILKTHDDVLSGRF VPKAIPYDGQDLDHMTIMWASSCHDNWKSFRSIFKTRLFSSKAMESQSALRERKTAEMVDFVRSRVGEEIDIGKVVCAFVLSSLFKIMFSIECIGFEATE EIQSVVRKLLELVAAPNVVDIFPILENLDPQGLRRAVLRCGKELSSVWKPSVNQRRESLRRGENTVADRAEDFLDVFLEIGLDDEQIDWLGQDLVVGGTD TVTATIEWAMAELMRNKGVMNKLREELKTEFSNEKPLNESDIYYHLPYLTAIVKETLRLHPPAPLLGPHRSLQTLKVMNYTIPEGAMVAVNVWAIARDRS IWGDDAESFKPERFMGSKVDFRGLDFELLPFGAGRRMCPAIPSAARQVPLLLANLVWNFDWCLPDGVDSAAELDMKEKFGLSSHKERPLILVPRPSSILQ N

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10005767 [exp]	0	1
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Lus10037458 [exp]	1.4	0.8735
AT1G48270		GCR1	G-protein-coupled receptor 1 (...		Lus10018333 [exp]	6.3	0.8481
AT1G30300			Metallo-hydrolase/oxidoreducta...		Lus10038519 [exp]	7.5	0.8671
AT1G02570			unknown protein		Lus10025023 [exp]	8.7	0.8464
AT1G18210			Calcium-binding EF-hand family...		Lus10042008 [exp]	8.8	0.7847
AT5G49460		ACLB-2	ATP citrate lyase subunit B 2 ...		Lus10016910 [exp]	9.5	0.8496
AT3G23090			TPX2 (targeting protein for Xk...		Lus10021223 [exp]	15.6	0.8171
AT1G80690			PPPDE putative thiol peptidase...		Lus10026215 [exp]	17.1	0.8432
AT5G37790			Protein kinase superfamily pro...		Lus10028518 [exp]	17.7	0.8120
AT5G48560	bHLH	bHLH078	basic helix-loop-helix (bHLH) ...		Lus10002337 [exp]	22.2	0.8160

Compare expression of checked genes

Lus10005767 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.