Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52140 88 / 3e-20 RING/U-box superfamily protein (.1) AT3G63530 79 / 5e-17 BB2, BB BIG BROTHER, RING/U-box superfamily protein (.1.2) AT5G24870 77 / 8e-16 RING/U-box superfamily protein (.1.2) AT5G10650 77 / 1e-15 RING/U-box superfamily protein (.1.2) AT4G34040 76 / 2e-15 RING/U-box superfamily protein (.1) AT5G42940 76 / 2e-15 RING/U-box superfamily protein (.1) AT4G31450 72 / 5e-14 RING/U-box superfamily protein (.1) AT2G15530 71 / 2e-13 RING/U-box superfamily protein (.1.2.3.4) AT1G45180 70 / 2e-13 RING/U-box superfamily protein (.1) AT3G19910 69 / 4e-13 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027424 [exp] 153 / 4e-46 ND / Lus10002049 [exp] 143 / 7e-42 ND / Lus10016867 [exp] 123 / 1e-35 ND / Lus10015574 [exp] 115 / 2e-31 ND / Lus10021853 [exp] 114 / 1e-30 ND / Lus10010849 [exp] 110 / 3e-30 ND / Lus10032492 [exp] 102 / 1e-27 ND / Lus10022558 [exp] 103 / 4e-27 ND / Lus10013569 [exp] 103 / 1e-25 AT4G35070 125 / 1e-34 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G136400 [exp] 105 / 2e-27 AT5G52140 113 / 1e-30 RING/U-box superfamily protein (.1) Potri.015G138700 [exp] 90 / 4e-22 AT5G52140 72 / 6e-16 RING/U-box superfamily protein (.1) Potri.003G204500 [exp] 86 / 8e-20 AT3G63530 175 / 2e-54 BIG BROTHER, RING/U-box superfamily protein (.1.2) Potri.001G267700 [exp] 82 / 3e-18 AT3G63530 301 / 4e-104 BIG BROTHER, RING/U-box superfamily protein (.1.2) Potri.001G019600 [exp] 79 / 2e-17 AT3G63530 176 / 1e-54 BIG BROTHER, RING/U-box superfamily protein (.1.2) Potri.009G062100 [exp] 79 / 4e-17 AT3G63530 269 / 4e-91 BIG BROTHER, RING/U-box superfamily protein (.1.2) Potri.005G090800 [exp] 73 / 9e-15 AT3G19910 187 / 5e-57 RING/U-box superfamily protein (.1) Potri.007G073200 [exp] 72 / 2e-14 AT3G19910 303 / 3e-102 RING/U-box superfamily protein (.1) Potri.006G274700 [exp] 71 / 8e-14 AT5G24870 263 / 4e-81 RING/U-box superfamily protein (.1.2) Potri.018G005600 [exp] 69 / 4e-13 AT5G24870 284 / 6e-89 RING/U-box superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10005768 pacid=23169840 polypeptide=Lus10005768 locus=Lus10005768.g ID=Lus10005768.BGIv1.0 annot-version=v1.0 ATGCGGCGCAGGGGACACAACCCACATTTCCCTGTTGATGAAGCTTTGGCTAGGCAGTTTCAGGAGCTGGATGGAGTTTGGGATGGACAGGATGAAGAAG CTTTAGCTCTACAGCTGAGCGAGATGGAGAATTCGTTCGGAACAATGTCGTTGAGCAAAGCTCACGGAACTGCAACTCATCATGGATCAACTTCTTCTTC TGTGAATGTTCAAGCCAATTTGAGTTTGAATTTGCAGGCTGCAAATCAGGACAACATCGATGTTGATAACATGACTTATGAGGAAATTAGTCAGTTACAG GAATCCATCGGCGAAGTAAGCAAAGGACTGTCAAAGGAAAAGTTGTCCAGGTTACCAACTTATGCATACAAATCATCAAGGAGAGGAAGACACTTGAAAG AAGATGACATAAAGTGTGTGGTATGCCAAACTGAGTTCAGCAACGGGGATAAACTGATCGCATTGTCTTGTATGCACAAATTCCACGACGAGTGTATTAG AGGCTGGTTCAGAAACGAAAAGGGAAGTTCTAGGGATGATGATGATGTTGAAGAACAGTTGAATTATGACGGTTATTTCGTAAACTGGTTGTTTTACGAC ACTGTCGATGATGCGTGTGATGTGGCTCAGGACATTGGTTTAGACTTAGGGTTTCAATTGACTCATGGCTCACATAAGAAGAACCCCCTTGAAGAAGAAA AACGGTTCTACTTGTATTGCTTGCATGGTGGTAGGGGCAAATCACAGTCCACTGCATCTTCAGAGAGTTCATATACGACTACAACATCATATTTAGGTTG TACGTTCATGGTGTGTGTGCGGCCTAAACACATTGACGATGGGTGA
AA sequence Show only first row Show all	>Lus10005768 pacid=23169840 polypeptide=Lus10005768 locus=Lus10005768.g ID=Lus10005768.BGIv1.0 annot-version=v1.0 MRRRGHNPHFPVDEALARQFQELDGVWDGQDEEALALQLSEMENSFGTMSLSKAHGTATHHGSTSSSVNVQANLSLNLQAANQDNIDVDNMTYEEISQLQ ESIGEVSKGLSKEKLSRLPTYAYKSSRRGRHLKEDDIKCVVCQTEFSNGDKLIALSCMHKFHDECIRGWFRNEKGSSRDDDDVEEQLNYDGYFVNWLFYD TVDDACDVAQDIGLDLGFQLTHGSHKKNPLEEEKRFYLYCLHGGRGKSQSTASSESSYTTTTSYLGCTFMVCVRPKHIDDG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52140			RING/U-box superfamily protein...		Lus10005768 [exp]	0	1
AT1G48380		HYP7, RHL1	HYPOCOTYL 7, root hair initiat...		Lus10017988 [exp]	8.3	0.6674
AT1G29630			5'-3' exonuclease family prote...		Lus10004608 [exp]	10.1	0.6699
AT5G19950			Domain of unknown function (DU...		Lus10043254 [exp]	10.4	0.6898
AT1G55205			unknown protein		Lus10032319 [exp]	39.9	0.6459
AT4G32400		EMB42, EMB104, ...	SODIUM HYPERSENSITIVE 1, EMBRY...		Lus10030076 [exp]	58.2	0.6448
AT3G08880			unknown protein		Lus10022668 [exp]	83.9	0.6348
AT1G73340			Cytochrome P450 superfamily pr...		Lus10031866 [exp]	84.7	0.5855
AT3G46100		ATHRS1	Histidyl-tRNA synthetase 1 (.1...		Lus10023925 [exp]	103.7	0.6144
AT5G22610			F-box/RNI-like/FBD-like domain...		Lus10025560 [exp]	112.9	0.5826
AT5G13980			Glycosyl hydrolase family 38 p...		Lus10041516 [exp]	130.8	0.5979

Compare expression of checked genes

Lus10005768 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.