Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52110 287 / 7e-97 CCB2, HCF208 HIGH CHLOROPHYLL FLUORESCENCE 208, COFACTOR ASSEMBLY OF COMPLEX C, Protein of unknown function (DUF2930) (.1), Protein of unknown function (DUF2930) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027422 [exp] 520 / 0 AT5G52110 305 / 3e-104 HIGH CHLOROPHYLL FLUORESCENCE 208, COFACTOR ASSEMBLY OF COMPLEX C, Protein of unknown function (DUF2930) (.1), Protein of unknown function (DUF2930) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G138400 [exp] 335 / 1e-115 AT5G52110 298 / 1e-101 HIGH CHLOROPHYLL FLUORESCENCE 208, COFACTOR ASSEMBLY OF COMPLEX C, Protein of unknown function (DUF2930) (.1), Protein of unknown function (DUF2930) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0161 [flax] [poplar] GAF PF11152 [flax] [poplar] CCB2_CCB4 Cofactor assembly of complex C subunit B, CCB2/CCB4
Representative CDS sequence Show only first row Show all	>Lus10005770 pacid=23169815 polypeptide=Lus10005770 locus=Lus10005770.g ID=Lus10005770.BGIv1.0 annot-version=v1.0 ATGAGCAGTCTATCAATCGGCTCATTGATGCAGCTGAATTGCAACAGTTTCCGTCTCCCCAATCGAACCAGAAGATTTACTACCACAATTCGAGCTGAAA ATTCTCAGCCTAGCAAAGATCAACAGGAACAGCTCAACGTCTCCGTTCTCCGCTTCACCTTCGGTAAGCAGAAGCTCATCACTACCCCACTTCCATTCCA TTTAAAAGAATTACTCTTCACTGAACTGGATTCCTTAGGCATTCTTGGATTGGATGAGACCTACTTGCCGAGATGGATAGGCTACGGATTCGGCTCCCTT CTTCTACTGAACCACTTCCTCGGCTCCGATTCCACCGCCACCACTGCGGCGCAGCTGAGGACAGAGGCACTGGGGCTCTCATTGGCAGCGTTCTCTGTCT CGCTTCCTTACATCGGCAGATTTCTCAAGGGTGCGACGAGGATGGAACAAGCGACACTTCCTGAAGGTGCTCAGCAGATATTTGTAATGTCGCCTACCAT ATCTGAAGCCGAGAAGGAGGAGTTTGCTTGGGGGACTTATATTCTACTGCGTAATACAAACTCCATAGCTGTGCTGATATCACTGCAAGGAGAATTATGT GTTCGTGGATACTGGAACGTACCATACAGTGACACGGCAAAAAATTCTGTCCTTGAATGGTTTAAGAGACGGGTTGAAAATACTGGTTTAGTGGATTTGA AAGACACTCTTTATTTGCAACAGGTGCCAGGATCTGACCTACGGGAGATGCTGCCTGAAGGGACTCGTTCTTTGCTTATAGTGCCGGTACTTCCGCCTAG CGATCAGAGATCTGATGAGATGATGAATAACTTAGGTTTTGTTCTGCTGGCATCCAACTTGGCGTATGCATATAGTGAGAAAGATAGAGCCTGGATAAAA GCTATTGCAAACAAGTTTCGAGGTGAGAGCCTGCGTTCCAAAGTCCAAACTCTTGACTAA
AA sequence Show only first row Show all	>Lus10005770 pacid=23169815 polypeptide=Lus10005770 locus=Lus10005770.g ID=Lus10005770.BGIv1.0 annot-version=v1.0 MSSLSIGSLMQLNCNSFRLPNRTRRFTTTIRAENSQPSKDQQEQLNVSVLRFTFGKQKLITTPLPFHLKELLFTELDSLGILGLDETYLPRWIGYGFGSL LLLNHFLGSDSTATTAAQLRTEALGLSLAAFSVSLPYIGRFLKGATRMEQATLPEGAQQIFVMSPTISEAEKEEFAWGTYILLRNTNSIAVLISLQGELC VRGYWNVPYSDTAKNSVLEWFKRRVENTGLVDLKDTLYLQQVPGSDLREMLPEGTRSLLIVPVLPPSDQRSDEMMNNLGFVLLASNLAYAYSEKDRAWIK AIANKFRGESLRSKVQTLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52110		CCB2, HCF208	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10005770 [exp]	0	1
AT5G19280	FHA	RAG1, KAPP	ROOT ATTENUATED GROWTH 1, kina...		Lus10021929 [exp]	1.4	0.8009
AT1G11340			S-locus lectin protein kinase ...		Lus10015424 [exp]	5.2	0.8049
AT5G54930			AT hook motif-containing prote...		Lus10040754 [exp]	7.3	0.7950
AT4G10180		FUS2, DET1, ATD...	FUSCA 2, DE-ETIOLATED 1, light...		Lus10032487 [exp]	8.5	0.7637
AT5G65380			MATE efflux family protein (.1...		Lus10015905 [exp]	11.1	0.6834
AT5G38520			alpha/beta-Hydrolases superfam...		Lus10023788 [exp]	13.3	0.7502
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Lus10005490 [exp]	14.8	0.7410
AT1G43620		UGT80B1, TT15	TRANSPARENT TESTA 15, UDP-Glyc...		Lus10005004 [exp]	17.8	0.7820
AT5G03330			Cysteine proteinases superfami...		Lus10013813 [exp]	23.0	0.7388
AT3G29390		RIK	RS2-interacting KH protein (.1...		Lus10015384 [exp]	25.8	0.7637

Compare expression of checked genes

Lus10005770 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.