Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52100 480 / 9e-173 CRR1 chlororespiration reduction 1, Dihydrodipicolinate reductase, bacterial/plant (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027421 [exp] 523 / 0 AT5G52100 418 / 8e-149 chlororespiration reduction 1, Dihydrodipicolinate reductase, bacterial/plant (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G135400 [exp] 527 / 0 AT5G52100 489 / 1e-176 chlororespiration reduction 1, Dihydrodipicolinate reductase, bacterial/plant (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01113 [flax] [poplar] DapB_N Dihydrodipicolinate reductase, N-terminus CL0139 [flax] [poplar] GADPH_aa-bio_dh PF05173 [flax] [poplar] DapB_C Dihydrodipicolinate reductase, C-terminus
Representative CDS sequence Show only first row Show all	>Lus10005771 pacid=23169842 polypeptide=Lus10005771 locus=Lus10005771.g ID=Lus10005771.BGIv1.0 annot-version=v1.0 ATGGAAGTTCTGAAAAGCTGCCGTTTTCAGTTTACGTTTCATGGGATTTCCAGGAATGTCAAAGCAACCACCACCACCAGGGCTCCTGTCTACTGCTCAG CCGTTCAACCTACTCAGAGCAATATCAAGGTTATCATAAATGGAGCAGCAAAGGAAATTGGGAGGGCGGCTGTGCTGGCAGTTACCAAAGCTAGAGGAAT GGAAGTTGCCGGTGCCGTTGACAAACAGTTTGTCGGCGAAGATATTGGAAAGCTTTGTGACATGGAAGAGCCGCTTGAAATACCCGTGATAAATGATCTC ACCATGGTTCTAGGCTCCATATCTCAGTCGAAAGAGACGGGAGTGGTTGTTGACTTCACCGATCCTTCGACGGTTTACGATAATGTGAAGCAGGCAACAG CGTTTGGTATGAGAAGTGTGGTGTACGTGCCTCGGATTAAAGTGGATACAGTCGGGGCATTGTCGGCATTCTGCGACAAAGCCAGCATGGGCTGTTTGGT TGCACCGACTCTTTCCATAGGGTCCATTCTCCTCCAGCAAGCAGCTATTTCTGCTTCTTTCCACTACAACAATGTAGAAATTGTGGAATCTGCAGCAGAA GCTACGGACCTTCCATCAGCTGATGCAGTCCAAATAGCGAAAAACCTCTCGAATCTGGGGCAGATCTATAACAAGGGCGATATATCAACAGACGTCAAGG CAAGGGGCCAAGTTCTTGGTGAAGATGGGGTCAGGGTGCACAGCATGGTACTACCAGGGTTGCCATCAAGCACAGCAGTATACTTCTCTGGCCCAGGAGA GGTTTACTCTGTCAAGCATGACATAACAAGTGTCCAGAGCCTTATGCCTGGTCTTATCTTGGCTATCAGAAAGGTGATCCGTGTTAAGAATCTGGTGTAT GGTCTAGAGAAATTTTTGTAA
AA sequence Show only first row Show all	>Lus10005771 pacid=23169842 polypeptide=Lus10005771 locus=Lus10005771.g ID=Lus10005771.BGIv1.0 annot-version=v1.0 MEVLKSCRFQFTFHGISRNVKATTTTRAPVYCSAVQPTQSNIKVIINGAAKEIGRAAVLAVTKARGMEVAGAVDKQFVGEDIGKLCDMEEPLEIPVINDL TMVLGSISQSKETGVVVDFTDPSTVYDNVKQATAFGMRSVVYVPRIKVDTVGALSAFCDKASMGCLVAPTLSIGSILLQQAAISASFHYNNVEIVESAAE ATDLPSADAVQIAKNLSNLGQIYNKGDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTAVYFSGPGEVYSVKHDITSVQSLMPGLILAIRKVIRVKNLVY GLEKFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52100		CRR1	chlororespiration reduction 1,...		Lus10005771 [exp]	0	1
AT3G09250			Nuclear transport factor 2 (NT...		Lus10021504 [exp]	3.3	0.8680
AT4G20030			RNA-binding (RRM/RBD/RNP motif...		Lus10006936 [exp]	5.8	0.8656
AT1G55300		TAF7	TBP-associated factor 7 (.1.2)		Lus10021337 [exp]	7.3	0.8506
AT1G27510			Protein of unknown function (D...		Lus10042125 [exp]	8.9	0.8375
AT1G10510		EMB2004	embryo defective 2004, RNI-lik...		Lus10030658 [exp]	14.7	0.8117
AT5G52100		CRR1	chlororespiration reduction 1,...		Lus10027421 [exp]	15.3	0.8301
AT2G17695			unknown protein		Lus10041839 [exp]	16.9	0.8636
AT1G32070		ATNSI	nuclear shuttle interacting (....		Lus10003245 [exp]	18.3	0.8419
AT5G24060			Pentatricopeptide repeat (PPR)...		Lus10027532 [exp]	18.7	0.8461
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10038385 [exp]	19.9	0.8443

Compare expression of checked genes

Lus10005771 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.