Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52060 267 / 7e-88 ATBAG1 BCL-2-associated athanogene 1 (.1) AT5G07220 229 / 2e-73 ATBAG3 BCL-2-associated athanogene 3 (.1) AT5G62100 227 / 3e-73 ATBAG2 BCL-2-associated athanogene 2 (.1.2.3) AT3G51780 112 / 8e-29 ATBAG4 BCL-2-associated athanogene 4 (.1) AT5G40630 79 / 1e-17 Ubiquitin-like superfamily protein (.1) AT5G14360 72 / 4e-15 Ubiquitin-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027420 [exp] 494 / 2e-177 AT5G52060 349 / 6e-120 BCL-2-associated athanogene 1 (.1) Lus10015004 [exp] 322 / 5e-110 AT5G52060 333 / 4e-114 BCL-2-associated athanogene 1 (.1) Lus10038882 [exp] 319 / 8e-109 AT5G52060 327 / 1e-111 BCL-2-associated athanogene 1 (.1) Lus10023279 [exp] 152 / 1e-44 AT5G07220 196 / 4e-62 BCL-2-associated athanogene 3 (.1) Lus10006328 [exp] 152 / 3e-44 AT5G52060 194 / 2e-60 BCL-2-associated athanogene 1 (.1) Lus10029598 [exp] 146 / 4e-42 AT5G52060 195 / 8e-61 BCL-2-associated athanogene 1 (.1) Lus10005051 [exp] 125 / 1e-32 AT3G51780 221 / 1e-69 BCL-2-associated athanogene 4 (.1) Lus10027822 [exp] 123 / 1e-32 AT3G51780 221 / 4e-71 BCL-2-associated athanogene 4 (.1) Lus10003393 [exp] 83 / 3e-18 AT3G51780 180 / 5e-56 BCL-2-associated athanogene 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G135500 [exp] 344 / 6e-118 AT5G52060 303 / 2e-101 BCL-2-associated athanogene 1 (.1) Potri.012G133400 [exp] 323 / 1e-109 AT5G52060 305 / 2e-102 BCL-2-associated athanogene 1 (.1) Potri.003G121500 [exp] 197 / 4e-61 AT5G52060 243 / 1e-78 BCL-2-associated athanogene 1 (.1) Potri.001G110300 [exp] 194 / 2e-59 AT5G52060 239 / 2e-76 BCL-2-associated athanogene 1 (.1) Potri.001G358200 [exp] 166 / 1e-49 AT5G07220 207 / 9e-66 BCL-2-associated athanogene 3 (.1) Potri.001G279500 [exp] 148 / 1e-42 AT3G51780 210 / 2e-67 BCL-2-associated athanogene 4 (.1) Potri.009G074300 [exp] 144 / 6e-41 AT3G51780 196 / 4e-62 BCL-2-associated athanogene 4 (.1) Potri.016G121200 [exp] 91 / 3e-21 AT3G51780 218 / 1e-70 BCL-2-associated athanogene 4 (.1) Potri.001G339100 [exp] 73 / 2e-15 AT5G14360 166 / 6e-53 Ubiquitin-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02179 [flax] [poplar] BAG BAG domain
Representative CDS sequence Show only first row Show all	>Lus10005772 pacid=23169828 polypeptide=Lus10005772 locus=Lus10005772.g ID=Lus10005772.BGIv1.0 annot-version=v1.0 ATGATGAGGATGAAGACTAAATCGACAATGTTCACCAACGGCGTTCCGACACCTGTCCCCGCAGAATCCAGACGAGCCGAGTGGGAGCTCCGACCCGGCG GAATGTTGGTCCAGAAGCGGAACCCGGACTCCGACCACCGGTCGATTCCTCCACCGACACTCTCCACCGACAATTCGGGTCCGGGGGAGCTGAAGAAGAT GCTGATCGGGCCGACGGGGCTAAGCCACCAAGACCAGAAGCTGATTTACAAAGACAAAGAGAGAGATTCCAAGGCGTTTCTGGACATTACAGGGGTGAAA GATAAGTCAAAGATTGTTCTTGTTGAGGATCCATTGAGTCAAGAGAGGCGTTACGTTGAGATGAGGAAGAATGCCAAATTGGAAAAGGCTTCCAAAACTA TCTCTGAGATTAGCTTGGAAGTCGACAGGCTTGCTGGCCGGGTGTCGGCTCTTGAATTGGTGATTGGTAAAGGAGGGAAAGTAGCAGAGAAAGATGTGCT TGGTTTGATTGAGTTGTTGATGAATGAGTTGCTGAAGCTTGATGGGATTATGGGCGATGGTGATGTCAAATTGCAGAGGAAAATGCAGGTGAAAAGAGTA CAAAAGTATGTTGAGACACTAGACATGTTAAAGGTGAAGAATTCCATTCCAAATGGAACTCAAAAACCAATGCAACAGCAACAACAAGATCAAACAAGGC AAGCAAATGGGCACAATAGATTAGCTCCAATCGATGAACATCCACCTAGGTACACCAATGTAGAACAAAAACAACAACATCAGTATCACCAACATCAACA ACCGTTGAGGACTTCGAACTCAGGACCGGTGGTTGTGACCACACAATGGGAAACATTCGATTCAACACCACCACCACCATCAATAGTTCCCGGGACATCA ACAATGGCCGCCAACAATGGACATCAACAGCAGCCAAAGTTCCCATGGGAGTTCTTTGGTTGA
AA sequence Show only first row Show all	>Lus10005772 pacid=23169828 polypeptide=Lus10005772 locus=Lus10005772.g ID=Lus10005772.BGIv1.0 annot-version=v1.0 MMRMKTKSTMFTNGVPTPVPAESRRAEWELRPGGMLVQKRNPDSDHRSIPPPTLSTDNSGPGELKKMLIGPTGLSHQDQKLIYKDKERDSKAFLDITGVK DKSKIVLVEDPLSQERRYVEMRKNAKLEKASKTISEISLEVDRLAGRVSALELVIGKGGKVAEKDVLGLIELLMNELLKLDGIMGDGDVKLQRKMQVKRV QKYVETLDMLKVKNSIPNGTQKPMQQQQQDQTRQANGHNRLAPIDEHPPRYTNVEQKQQHQYHQHQQPLRTSNSGPVVVTTQWETFDSTPPPPSIVPGTS TMAANNGHQQQPKFPWEFFG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Lus10005772 [exp]	0	1
AT2G24290			Protein of unknown function (D...		Lus10019053 [exp]	1.4	0.8077
AT5G62220		ATGT18	glycosyltransferase 18 (.1)		Lus10027386 [exp]	2.8	0.8554
AT3G22540			Protein of unknown function (D...		Lus10006107 [exp]	4.0	0.7784
AT3G17090			Protein phosphatase 2C family ...		Lus10017061 [exp]	4.2	0.7489
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10012056 [exp]	18.1	0.7212
AT5G25830	GATA	GATA12	GATA transcription factor 12 (...		Lus10002036 [exp]	24.8	0.7676
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Lus10035859 [exp]	26.8	0.7466
AT2G37550		ASP1, AGD7	yeast pde1 suppressor 1, ARF-G...		Lus10003978 [exp]	27.7	0.7608
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10002373 [exp]	28.4	0.7618
AT3G05100			S-adenosyl-L-methionine-depend...		Lus10001712 [exp]	33.4	0.7288

Compare expression of checked genes

Lus10005772 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.