Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52790 205 / 3e-64 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G52800 194 / 4e-60 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G80320 190 / 2e-58 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G03070 181 / 7e-55 AOP1.1, AOP1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G15540 174 / 2e-52 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G52820 171 / 8e-51 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G28030 146 / 3e-41 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G52810 128 / 6e-35 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G03050 95 / 2e-22 AOP3 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G14130 84 / 2e-18 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005776 [exp] 505 / 0 AT1G52790 198 / 2e-61 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10005774 [exp] 457 / 3e-164 AT1G52790 144 / 2e-41 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021025 [exp] 324 / 1e-110 AT1G52800 226 / 2e-72 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027419 [exp] 226 / 7e-75 AT1G52800 89 / 4e-22 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10016659 [exp] 179 / 3e-54 AT1G52820 445 / 1e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10023024 [exp] 176 / 1e-52 AT1G52820 371 / 2e-129 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10005775 [exp] 159 / 2e-49 AT1G52800 70 / 1e-15 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10041281 [exp] 154 / 2e-45 AT1G52790 298 / 5e-102 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10005516 [exp] 154 / 9e-44 AT1G52820 278 / 7e-92 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G176000 [exp] 220 / 6e-70 AT1G52790 460 / 2e-164 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G176500 [exp] 219 / 1e-69 AT1G52800 338 / 1e-116 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G176200 [exp] 197 / 3e-61 AT1G52820 496 / 8e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G176100 [exp] 191 / 6e-59 AT1G52800 286 / 5e-96 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G175900 [exp] 191 / 8e-59 AT1G52820 328 / 2e-112 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G175800 [exp] 185 / 2e-56 AT1G52820 338 / 2e-116 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.018G033400 [exp] 181 / 9e-55 AT1G52820 269 / 4e-89 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G248000 [exp] 178 / 5e-53 AT1G52820 280 / 6e-93 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G029700 [exp] 85 / 2e-18 AT2G36690 478 / 1e-169 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451500 [exp] 84 / 4e-18 AT4G10500 325 / 2e-110 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10005773 pacid=23169821 polypeptide=Lus10005773 locus=Lus10005773.g ID=Lus10005773.BGIv1.0 annot-version=v1.0 ATGGCAGCTCCCAGCAGTATTCCTGTTATATATTTCTCGGGAGTGAAGCCGGGAACCAATTCATGGGTTTCTGCTCGGACAACCGTGAGAAGGGCGATGG AAGAGGTCGGGTGTTTCAAGGCCATATACACCGGTGCCGGCGAGATTTCGATTTTCGAGACAGTAAAAGAGCTGTTCGATCTTCCAGATGAGATAAAAAA CAAGAACACCAGCACTAAGCCCTTTTTCGGAGGTTCCGTGCTGAGTCCTCTCAACAGTCATACTCACGAATCACTAGGAATCGATAACCCGACAAGCCTC GATACCACTCAAGGCTTCACCAATCTTATGTGGCCGGATTCTGGAAATGATGCCTTCTGCCAGTCGAGTCTTTCCATGTCGAAGCTAATGGTGGAACTAT TCGACATGATATTGAAGATGGTGATGGAAAGCTACGAGGTTGTCGAATCAGGGTTTGGACCTGAGTCGATGAATCACCAAATTCGATACTCCAAGTACCC CTTGCCGTCGTCTAATCAAACCTCCGCTACTGATCTGAGCCTCACTCCTCATACAGATTTTACCTTTACGTCCATACTTCATCAGAACCAAGTCAACGGC TTGCAAATCAAACCACCGAACGATCCACAACGTTGGGTTGGCGTTGACCTTACTACGCCGTCGTCCTTCTTGGTTTTCGCAGGGGATGCACTCATGGCAT GGAGTAATAACAGAATACAAAGTGTATTGCATCAAGTAATACGATCAAAGGGAAAGGAAGTAAGGTACAGTGCTGGACTAGTTTCTTACGTGAAGAAAGG CACCAAGATCCAGCCGCCCAAGGAGTTTGTGGATGAAGCTCATCCTCTGGGATACAAACCTTTTGATCACTTTGAATATCTTGAAACCTTATACAAAACC CTAAGTATGAAGAAGCCTGATGTTAGGATCAAGGATTGTTATGGTTTGCTCCAATAA
AA sequence Show only first row Show all	>Lus10005773 pacid=23169821 polypeptide=Lus10005773 locus=Lus10005773.g ID=Lus10005773.BGIv1.0 annot-version=v1.0 MAAPSSIPVIYFSGVKPGTNSWVSARTTVRRAMEEVGCFKAIYTGAGEISIFETVKELFDLPDEIKNKNTSTKPFFGGSVLSPLNSHTHESLGIDNPTSL DTTQGFTNLMWPDSGNDAFCQSSLSMSKLMVELFDMILKMVMESYEVVESGFGPESMNHQIRYSKYPLPSSNQTSATDLSLTPHTDFTFTSILHQNQVNG LQIKPPNDPQRWVGVDLTTPSSFLVFAGDALMAWSNNRIQSVLHQVIRSKGKEVRYSAGLVSYVKKGTKIQPPKEFVDEAHPLGYKPFDHFEYLETLYKT LSMKKPDVRIKDCYGLLQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52790			2-oxoglutarate (2OG) and Fe(II...		Lus10005773 [exp]	0	1
AT4G23340			2-oxoglutarate (2OG) and Fe(II...		Lus10009663 [exp]	8.2	0.8644
AT3G58190	AS2	LBD29, ASL16	ASYMMETRIC LEAVES 2-LIKE 16, l...		Lus10000613 [exp]	9.3	0.8606
AT3G29034			unknown protein		Lus10033010 [exp]	13.2	0.8615
AT5G54510		DFL1, GH3.6	DWARF IN LIGHT 1, Auxin-respon...		Lus10018510 [exp]	20.3	0.8448
					Lus10008694 [exp]	20.4	0.8135
AT3G60820		PBF1	N-terminal nucleophile aminohy...		Lus10030272 [exp]	21.1	0.7753
AT1G01490			Heavy metal transport/detoxifi...		Lus10014967 [exp]	21.2	0.8415
AT4G25560	MYB	LAF1, ATMYB18	LONG AFTER FAR-RED LIGHT 1, my...		Lus10027458 [exp]	22.6	0.8393
AT1G52790			2-oxoglutarate (2OG) and Fe(II...		Lus10005774 [exp]	22.6	0.8381
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10030440 [exp]	24.1	0.7567

Compare expression of checked genes

Lus10005773 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.