Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52790 144 / 2e-41 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G52800 140 / 7e-40 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G03070 128 / 3e-35 AOP1.1, AOP1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G80320 126 / 1e-34 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G52820 118 / 1e-31 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G15540 117 / 4e-31 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G28030 103 / 4e-26 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G52810 86 / 1e-19 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G36690 61 / 1e-10 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G03050 55 / 2e-08 AOP3 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005773 [exp] 457 / 4e-164 AT1G52790 205 / 3e-64 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10005776 [exp] 375 / 7e-132 AT1G52790 198 / 2e-61 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021025 [exp] 241 / 3e-79 AT1G52800 226 / 2e-72 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027419 [exp] 225 / 2e-75 AT1G52800 89 / 4e-22 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10005775 [exp] 159 / 5e-50 AT1G52800 70 / 1e-15 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10023024 [exp] 117 / 3e-31 AT1G52820 371 / 2e-129 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10016659 [exp] 116 / 8e-31 AT1G52820 445 / 1e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10013132 [exp] 96 / 6e-23 AT1G52800 222 / 8e-71 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10005516 [exp] 95 / 2e-22 AT1G52820 278 / 7e-92 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G176500 [exp] 164 / 3e-49 AT1G52800 338 / 1e-116 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G176000 [exp] 163 / 1e-48 AT1G52790 460 / 2e-164 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G176200 [exp] 135 / 6e-38 AT1G52820 496 / 8e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G176100 [exp] 132 / 5e-37 AT1G52800 286 / 5e-96 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.018G033400 [exp] 121 / 1e-32 AT1G52820 269 / 4e-89 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G175900 [exp] 117 / 5e-31 AT1G52820 328 / 2e-112 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G248000 [exp] 117 / 6e-31 AT1G52820 280 / 6e-93 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G175800 [exp] 112 / 4e-29 AT1G52820 338 / 2e-116 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G049000 [exp] 65 / 6e-12 AT2G36690 209 / 5e-65 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G048900 [exp] 59 / 7e-10 AT2G36690 250 / 5e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10005774 pacid=23169827 polypeptide=Lus10005774 locus=Lus10005774.g ID=Lus10005774.BGIv1.0 annot-version=v1.0 ATGGCAGCTCCCAGCAGTATTCCTGTTATATATTTCTCGGGAGTGAAGCCGGGAACCAATTCATGGGTTTCTGCTCGGACAACCGTGAGAAGGGCGATGG AAGAGGTCGGGTGTTTCAAGGCCATATACACAGGTGCCGGCGAGATTTCGATTTTCGAGACGGTAAAAGAGCTGTTCGATCTTCCAGATGAGATAAAAAA CAAGAACACCAGCACTAAGCCCTTTTTCGGAGGTTCCGTGCTGAGTCCTCTCAACAGTCATACTCACGAATCACTAGGAATCGATAACCCGACAAGCCTC GATACCACTCAAGGCTTCACCAATCTTATGTGGCCGGATTCTGGAAATGATGCCTTCTGCCAGTCGAGTCTTTCCATGTCGAAGCTAATGGTGGAACTAT TCGACATGATATTGAAGATGGTGATGGAAAGCTACGAGGTTGTCGAATTAGGGTTTGGACCTGAGTCGATGAATCACCTAATTCGATACTCTAAGTTCCC ATTGCCGTCGTCTAATCAAACCTCCGGTACTGATCTGAGCGTCAATCCTCATAAAGATTTTACCTTTCTGTCCATACTTCATCAGAACCAAGTCAACGGC TTGCAAATCCAACCACCGATCGATCCACAACGTTGGGTTGACGTTGACCTTACTACGCCGTCGTCCTTCTTGGTTTTCGCGGGGGATGCACTCATGGGTA GTCACATACATGCTTATTTTGATTACCCAAAGTTTAAAACTAGTTCTATTTTGTAA
AA sequence Show only first row Show all	>Lus10005774 pacid=23169827 polypeptide=Lus10005774 locus=Lus10005774.g ID=Lus10005774.BGIv1.0 annot-version=v1.0 MAAPSSIPVIYFSGVKPGTNSWVSARTTVRRAMEEVGCFKAIYTGAGEISIFETVKELFDLPDEIKNKNTSTKPFFGGSVLSPLNSHTHESLGIDNPTSL DTTQGFTNLMWPDSGNDAFCQSSLSMSKLMVELFDMILKMVMESYEVVELGFGPESMNHLIRYSKFPLPSSNQTSGTDLSVNPHKDFTFLSILHQNQVNG LQIQPPIDPQRWVDVDLTTPSSFLVFAGDALMGSHIHAYFDYPKFKTSSIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52790			2-oxoglutarate (2OG) and Fe(II...		Lus10005774 [exp]	0	1
AT4G12010			Disease resistance protein (TI...		Lus10008221 [exp]	13.9	0.8807
AT1G70410		ATBCA4	beta carbonic anhydrase 4 (.1....		Lus10030614 [exp]	16.6	0.8746
AT1G68810	bHLH	bHLH030	basic helix-loop-helix (bHLH) ...		Lus10001885 [exp]	18.9	0.8652
AT1G16310			Cation efflux family protein (...		Lus10000061 [exp]	20.3	0.8762
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10001394 [exp]	20.7	0.8732
AT1G52790			2-oxoglutarate (2OG) and Fe(II...		Lus10005773 [exp]	22.6	0.8381
AT3G24570			Peroxisomal membrane 22 kDa (M...		Lus10022130 [exp]	40.2	0.8612
					Lus10039776 [exp]	44.1	0.8076
AT1G28490		OSM1, ATSYP61, ...	syntaxin of plants 61 (.1.2)		Lus10039880 [exp]	46.5	0.8608
AT5G08100		ASPGA1	asparaginase A1, N-terminal nu...		Lus10034668 [exp]	54.2	0.8559

Compare expression of checked genes

Lus10005774 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.