Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52790 197 / 2e-61 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G52800 191 / 8e-59 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G80320 178 / 1e-53 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G52820 172 / 3e-51 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G03070 165 / 1e-48 AOP1.1, AOP1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G15540 162 / 2e-47 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G28030 151 / 3e-43 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G52810 123 / 7e-33 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G14130 98 / 2e-23 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G03050 92 / 2e-21 AOP3 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005773 [exp] 505 / 0 AT1G52790 205 / 3e-64 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10005774 [exp] 375 / 7e-132 AT1G52790 144 / 2e-41 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021025 [exp] 333 / 3e-114 AT1G52800 226 / 2e-72 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027419 [exp] 232 / 4e-77 AT1G52800 89 / 4e-22 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10005775 [exp] 170 / 1e-53 AT1G52800 70 / 1e-15 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10023024 [exp] 171 / 5e-51 AT1G52820 371 / 2e-129 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10016659 [exp] 170 / 1e-50 AT1G52820 445 / 1e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10013132 [exp] 154 / 2e-44 AT1G52800 222 / 8e-71 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10005516 [exp] 151 / 6e-43 AT1G52820 278 / 7e-92 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G176500 [exp] 215 / 5e-68 AT1G52800 338 / 1e-116 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G176000 [exp] 213 / 3e-67 AT1G52790 460 / 2e-164 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G176200 [exp] 199 / 7e-62 AT1G52820 496 / 8e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G176100 [exp] 183 / 7e-56 AT1G52800 286 / 5e-96 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G248000 [exp] 177 / 1e-52 AT1G52820 280 / 6e-93 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.018G033400 [exp] 171 / 4e-51 AT1G52820 269 / 4e-89 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G175900 [exp] 168 / 8e-50 AT1G52820 328 / 2e-112 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G175800 [exp] 167 / 1e-49 AT1G52820 338 / 2e-116 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G029700 [exp] 92 / 1e-20 AT2G36690 478 / 1e-169 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G455400 [exp] 83 / 4e-18 AT1G14130 376 / 1e-131 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10005776 pacid=23169836 polypeptide=Lus10005776 locus=Lus10005776.g ID=Lus10005776.BGIv1.0 annot-version=v1.0 ATGGCTTCCAGCGGTATTCCAATTATATATTTGTCGGGAGTGAAGCCTCAAACGGAGGCGTGGGTTTCTGCTCGGACAGCCGTGAGAAGGGCGATGGAAG AGTTCGGCTGTTTCCAGGCCATATACACCGGTGCCAGCGAGATTCCGATTTTCGAGACAGTAGAAGAGCTGTTCGATCTTCCGGATGAGATAAAAAACAA GAACACCAGCACGAAGCCCTTTTTCGGCGGTTCCGTGCGGAGTCCAATCCACAGTAATACTCACGAATCACTAGCGATCGATAACCCGACAAGCCTCGAT ACCACTCGAGGCTTCATCGATCTTATGTGGCCGGATTCTGGAAATGATGCCTTCTGCCAGGCGAGTCTTTCTATGTCGAAGCTAATGGTGGAACTATTGG AGATAATTTTGAAGATGGTGATGGAAAGCCATGGGATTGTCGAATCAGGGTTTGAATCCGAGTCGATGAATAATCACATTCGGTATAGTAAGTATCACTT GCCGCAGTCAGATCGAACCTCCAGTGCTGATTTGAGCCTCAATCCCCATAAGGATGTTTCTTTCTTGACCATACTTCATCAGAATCATGTCAACGGTTTG CAGATCCAACCACCAAACGACTCACAACGTTGGGTTGATGTTGACCTTACTACGCCGTCGTCCTTCCTGATTTTCGCCGGGGAGCCACTCACGGCATGGA GTAATGATCGAATACCAAGCGCATTGCATCAAGTAATACCGCCAAAGGGAAAGGAAGAAAGGTACAGTGTTGGACTGTTTTCTTACGTGAAGAAAGGCAC CAAGATCCAGCCGCCCAAAGAGTTTGTGGATGAAGCCCATCCTTTGGGATACAAACCTTTTGATAAGTTTGAATATCTTGAAATCATACACAGAGACCTA TCTATGAAGAAGCGTTCGCCCATCAAGGATTATTATGGTTTCCTCCAATAA
AA sequence Show only first row Show all	>Lus10005776 pacid=23169836 polypeptide=Lus10005776 locus=Lus10005776.g ID=Lus10005776.BGIv1.0 annot-version=v1.0 MASSGIPIIYLSGVKPQTEAWVSARTAVRRAMEEFGCFQAIYTGASEIPIFETVEELFDLPDEIKNKNTSTKPFFGGSVRSPIHSNTHESLAIDNPTSLD TTRGFIDLMWPDSGNDAFCQASLSMSKLMVELLEIILKMVMESHGIVESGFESESMNNHIRYSKYHLPQSDRTSSADLSLNPHKDVSFLTILHQNHVNGL QIQPPNDSQRWVDVDLTTPSSFLIFAGEPLTAWSNDRIPSALHQVIPPKGKEERYSVGLFSYVKKGTKIQPPKEFVDEAHPLGYKPFDKFEYLEIIHRDL SMKKRSPIKDYYGFLQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52790			2-oxoglutarate (2OG) and Fe(II...		Lus10005776 [exp]	0	1
AT1G52800			2-oxoglutarate (2OG) and Fe(II...		Lus10005775 [exp]	3.5	0.7726
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10032324 [exp]	3.9	0.7787
AT4G34135		UGT73B2	UDP-glucosyltransferase 73B2 (...		Lus10010240 [exp]	5.0	0.7172
AT4G18220			Drug/metabolite transporter su...		Lus10028132 [exp]	9.5	0.7047
					Lus10008653 [exp]	12.1	0.6121
AT3G50980		XERO1	dehydrin xero 1 (.1)		Lus10003340 [exp]	12.2	0.7185
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Lus10033437 [exp]	16.9	0.6536
AT1G30825		DIS2, ARPC2, AR...	DISTORTED TRICHOMES 2, ACTIN-R...		Lus10002867 [exp]	17.5	0.7414
					Lus10029069 [exp]	18.0	0.6390
AT3G23130	C2H2ZnF	FLO10, FON1, SU...	SUPERMAN, FLORAL ORGAN NUMBER ...		Lus10022206 [exp]	29.4	0.6547

Compare expression of checked genes

Lus10005776 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.