Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21960 432 / 6e-153 unknown protein AT1G56180 89 / 1e-19 unknown protein AT5G27290 74 / 1e-14 unknown protein AT1G54680 57 / 2e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006822 [exp] 216 / 8e-69 AT2G21960 248 / 1e-81 unknown protein Lus10006532 [exp] 93 / 6e-21 AT1G56180 510 / 0.0 unknown protein Lus10033822 [exp] 77 / 2e-15 AT5G27290 494 / 3e-177 unknown protein Lus10018966 [exp] 63 / 7e-11 AT5G27290 479 / 8e-171 unknown protein Lus10033821 [exp] 52 / 3e-07 AT1G54680 187 / 3e-58 unknown protein Lus10018965 [exp] 49 / 3e-06 AT1G54680 187 / 8e-59 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G084400 [exp] 484 / 1e-173 AT2G21960 449 / 8e-160 unknown protein Potri.010G171400 [exp] 89 / 9e-20 AT1G56180 500 / 6e-178 unknown protein Potri.013G029000 [exp] 75 / 6e-15 AT5G27290 451 / 5e-160 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005779 pacid=23174715 polypeptide=Lus10005779 locus=Lus10005779.g ID=Lus10005779.BGIv1.0 annot-version=v1.0 ATGGCTATTCCTTCGACTTCTTCAATGGTTTCTTCCATTTCAACAACCTCCATTGCCATCCACAGACTCCGCATCCGATCAGTCTCTGTAGCGGCCGCCA CATCATCATCATCATCGTCTTCCTCCTCGTCGATAATCGATCTCAAAGCCCTCGAATCAGCCATTTCCAAGAAGGATAGCAATGCAGTGAAGGAGGCGCT TGATGAGCTAACCAAAGTTGGCTGGGCGAAGCAATGGAGTTCTCAGCCTTATGTCTCTCGTCGTACGACATCGCTTCGCGAACTAACCACACTCGGGATT AAGAATGCGGAGAACCTCGCTATCCCAAGTGTTCGAAACGATGCAGCTTTCCTTTTCACAGTGGTGGGAACAACTGGGTTTCTAGGAGTTCTTGCAGGTC AACTCCCAGGGGATTGGGGCTTCTTCGTCCCCTACTTAATCGGCAGCATCTCGCTAGTTGTTCTAGCCATTGGAAGCACTGCGCCCGGGCTTCTCCAGGT CGCTATCAATGCCTTCTCATCGGTTTTCGAGGATTACCAGGACCGGATAGCTAGGCATGAAGCTGCTCACTTTCTAGTTGCTTACTTGCTGGGGCTACCG ATCCTCGGGTACTCGCTCGACATCGGGAAAGAGAATGTCAATCTGATTGATGAGAAGCTTGAGAAGTTGATATACAGTGGCCAGCTCGATTCCAAAGAAC TCGACCGGCTGGCAGTTGTGGCAATGGCCGGACTAGCTGCAGAAGGTCTGCAGTATGACAAAGTCATCGGTCAATCTGCCGATCTTTTCACCCTTCAGAG GTTCTTCAACAGGAGTAAGCCAACTCTCAGTAAAGATCAGCAACAAAACCTCACCAGATGGGCAGTTCTATTTGCAGCATCTCTCCTGAAGAACAACAAA TCACTCCATGAAGCACTAATGAAATCGATGTCGAACAAGGCATCCATAGTCGAATGCATTGCCGCCATCGAGCAAGCGACTGCCTGA
AA sequence Show only first row Show all	>Lus10005779 pacid=23174715 polypeptide=Lus10005779 locus=Lus10005779.g ID=Lus10005779.BGIv1.0 annot-version=v1.0 MAIPSTSSMVSSISTTSIAIHRLRIRSVSVAAATSSSSSSSSSSIIDLKALESAISKKDSNAVKEALDELTKVGWAKQWSSQPYVSRRTTSLRELTTLGI KNAENLAIPSVRNDAAFLFTVVGTTGFLGVLAGQLPGDWGFFVPYLIGSISLVVLAIGSTAPGLLQVAINAFSSVFEDYQDRIARHEAAHFLVAYLLGLP ILGYSLDIGKENVNLIDEKLEKLIYSGQLDSKELDRLAVVAMAGLAAEGLQYDKVIGQSADLFTLQRFFNRSKPTLSKDQQQNLTRWAVLFAASLLKNNK SLHEALMKSMSNKASIVECIAAIEQATA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21960			unknown protein		Lus10005779 [exp]	0	1
AT5G22800		EMB86, EMB263, ...	EMBRYO DEFECTIVE 86, EMBRYO DE...		Lus10003337 [exp]	1.4	0.9599
AT3G15360		ATHM4, ATM4, TR...	ARABIDOPSIS THIOREDOXIN M-TYPE...		Lus10042784 [exp]	3.5	0.9491
AT3G24430		HCF101	HIGH-CHLOROPHYLL-FLUORESCENCE ...		Lus10043252 [exp]	4.2	0.9436
AT2G28800		ABL3, ALB3	ALBINO 3, 63 kDa inner membran...		Lus10016570 [exp]	4.9	0.9486
AT3G15360		ATHM4, ATM4, TR...	ARABIDOPSIS THIOREDOXIN M-TYPE...		Lus10029755 [exp]	5.0	0.9447
AT4G22890		PGR5-LIKEA, PGR...	PGR5-LIKE A (.1.2.3.4.5)		Lus10006710 [exp]	6.0	0.9483
AT2G32500			Stress responsive alpha-beta b...		Lus10015134 [exp]	7.1	0.9305
AT5G38660		APE1	acclimation of photosynthesis ...		Lus10017574 [exp]	8.0	0.9413
AT3G18500			DNAse I-like superfamily prote...		Lus10014775 [exp]	8.1	0.9174
AT5G62840			Phosphoglycerate mutase family...		Lus10007865 [exp]	8.5	0.9353

Compare expression of checked genes

Lus10005779 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.