Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09970 676 / 0 CYP78A7 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) AT2G46660 479 / 8e-165 CYP78A6 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) AT3G61880 477 / 9e-164 CYP78A9 cytochrome p450 78a9 (.1.2) AT1G13710 472 / 2e-162 CYP78A5, KLUH KLUH, "cytochrome P450, family 78, subfamily A, polypeptide 5", cytochrome P450, family 78, subfamily A, polypeptide 5 (.1) AT1G74110 450 / 2e-153 CYP78A10 "cytochrome P450, family 78, subfamily A, polypeptide 10", cytochrome P450, family 78, subfamily A, polypeptide 10 (.1) AT1G01190 449 / 5e-153 CYP78A8 "cytochrome P450, family 78, subfamily A, polypeptide 8", cytochrome P450, family 78, subfamily A, polypeptide 8 (.1) AT2G40890 268 / 2e-83 REF8, CYP98A3, C3H1 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) AT3G48300 236 / 2e-71 CYP71A23 "cytochrome P450, family 71, subfamily A, polypeptide 23", cytochrome P450, family 71, subfamily A, polypeptide 23 (.1) AT5G67310 236 / 5e-71 CYP81G1 "cytochrome P450, family 81, subfamily G, polypeptide 1", cytochrome P450, family 81, subfamily G, polypeptide 1 (.1) AT2G45560 235 / 9e-71 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036627 [exp] 796 / 0 AT5G09970 735 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Lus10035844 [exp] 789 / 0 AT5G09970 729 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Lus10005995 [exp] 453 / 1e-154 AT2G46660 708 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Lus10030216 [exp] 449 / 3e-153 AT2G46660 697 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Lus10017334 [exp] 444 / 5e-151 AT3G61880 656 / 0.0 cytochrome p450 78a9 (.1.2) Lus10015788 [exp] 425 / 6e-145 AT1G13710 471 / 1e-163 KLUH, "cytochrome P450, family 78, subfamily A, polypeptide 5", cytochrome P450, family 78, subfamily A, polypeptide 5 (.1) Lus10001670 [exp] 388 / 2e-129 AT2G46660 588 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Lus10006821 [exp] 365 / 1e-124 AT5G09970 259 / 6e-84 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Lus10033524 [exp] 277 / 1e-86 AT2G40890 866 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G081200 [exp] 736 / 0 AT5G09970 743 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.005G084500 [exp] 735 / 0 AT5G09970 759 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.002G060900 [exp] 691 / 0 AT5G09970 703 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.005G200400 [exp] 689 / 0 AT5G09970 681 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.014G102700 [exp] 467 / 3e-160 AT2G46660 723 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.001G054800 [exp] 461 / 1e-157 AT1G74110 502 / 8e-174 "cytochrome P450, family 78, subfamily A, polypeptide 10", cytochrome P450, family 78, subfamily A, polypeptide 10 (.1) Potri.003G173500 [exp] 456 / 3e-156 AT1G74110 491 / 3e-170 "cytochrome P450, family 78, subfamily A, polypeptide 10", cytochrome P450, family 78, subfamily A, polypeptide 10 (.1) Potri.001G083900 [exp] 455 / 2e-155 AT2G46660 692 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.003G146800 [exp] 451 / 4e-154 AT2G46660 659 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.002G175200 [exp] 450 / 1e-153 AT2G46660 694 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10005780 pacid=23174721 polypeptide=Lus10005780 locus=Lus10005780.g ID=Lus10005780.BGIv1.0 annot-version=v1.0 ATGGAAGCCATTGACCATTTGCTCATAAACTCCAAAGACACAATCTGGTACTTGTACACCCTCCCTGCATTCCTCACCACCCAAACCCTCCTTGACACCT ACCTCATTTGCTCGCTCCTCGCCGCCTTCGCTTCCCTCGCCCTCCTCACGTGGGCGCTCTCCACGGGAGGAGGCATCGCCTGGACCAACGGCCGCAACTC TCGTGGCCAGGTTCGCATCCCTGGTCCGCGGGGTCTTCCTGTACTCGGCAGCCTGTTCACACTGGGCCGCGGCTTGGCTCACCGCACCCTGGCTTCCATT GCATGGAGCCAGGGTGTTAATATCCGCCAGCTCATGGCTCTGAGTCTCGGTGGGTCCACCCGGCTCGTGGTGACATCTGCCCCCACCACCGCTCGAGAAA TCTTAACCACTCCATCGTTCGCGGACCGCCCCATGAAGCAGTCAGTAAAGAGTTTGATGTTCAGTCGTGCCATTGGGTTCGCTCCCGACGGGACCTACTG GCGGAACCTGAGGAAGATCGCATCGACCCACCTCCTTTCACCACGTAGGATTTCGGCCCATGAGGGCCTACGCCAGGTGGAGTGTACCGCAATGTTGGGA AACATAGCCCAGGAGGCAAAAGCAAGCGGTGGAATCGTATCTTTGCGGTCCCACCTCAAGCTGGCCTCTCTCAATAATATAATGGGGTCCGTGTTTGGGA AAAGATATGACCACGTCCAGGATCGAGTCGAGTTAAACCGGTTGGAGGAGATGGTTCGTGAAGGGTTCGACCTATTGGGCGCGTTCAACTGGTCGGATTA CTTGCCGTGGCTGAGTTGGTTCTACGACCCTCTTCGGATCAACCAACGCTGTTTGGAACTCGTTCCGAAAGTCAAGGAACTCGTCAGGGGAATCATCGAA GAGCATCGTGGTCGTGAGCCCCATGCGGAAGGGAAGTTCGGTAGTGAAAGTGGCGATTTCGTTGATGTCTTGCTGTCCTTGGAAGGGAAGGAAAAGCTCG AGGATGATGACATGATCGCTGTCTTGTGGGAAATGATATTCAGAGGAACCGATACAACAGCACTGTTGACCGAGTGGGTCATGGCCGAGTTAGTTCTCCA CCCAGAAATCCAAAAAAAGCTACGAACCGAACTCGAAAACATAACCAAAAACCACCTCGTCTCATCCATAACCGATGCCGTTGCTGCCAAGTCACCCTAC CTACAGGCCGTGGTGAAAGAGACCCTCCGGGTCCATCCACCAGGCCCACTCCTCGCATGGGCCCGGCTGTCCACCCAAGACGTCCAACTAAGCAACGGGA TGCTGATCCCAGCCCACACCACAGCAATGATCAACATGTGGGCCATCACCCACGACCCTCAGGTCTGGGCCGACCCGCTCGAGTTCAGGCCAGAGAGGTT TTTGGAGGAGGACGTGGACATCCGTGGAGGCGACCTTAGGTTGGCACCGTTCGGTGCGGGCCGTAGGGTCTGCCCTGGTAAGAACTTGGGGATGGTGACT GTGGCCACGTGGGTGGCGAAGCTAGTGGCCGGGTTCGAGTGGCTCGAGGATCCGGACCACCCCGTGGATCTCGGAGAAGTGCTGAAGCTGTCCTGTGAGA TGAAGCATCCTCTGCAGGCAGTGGCTGTGCCTCTAGGGGTTTGA
AA sequence Show only first row Show all	>Lus10005780 pacid=23174721 polypeptide=Lus10005780 locus=Lus10005780.g ID=Lus10005780.BGIv1.0 annot-version=v1.0 MEAIDHLLINSKDTIWYLYTLPAFLTTQTLLDTYLICSLLAAFASLALLTWALSTGGGIAWTNGRNSRGQVRIPGPRGLPVLGSLFTLGRGLAHRTLASI AWSQGVNIRQLMALSLGGSTRLVVTSAPTTAREILTTPSFADRPMKQSVKSLMFSRAIGFAPDGTYWRNLRKIASTHLLSPRRISAHEGLRQVECTAMLG NIAQEAKASGGIVSLRSHLKLASLNNIMGSVFGKRYDHVQDRVELNRLEEMVREGFDLLGAFNWSDYLPWLSWFYDPLRINQRCLELVPKVKELVRGIIE EHRGREPHAEGKFGSESGDFVDVLLSLEGKEKLEDDDMIAVLWEMIFRGTDTTALLTEWVMAELVLHPEIQKKLRTELENITKNHLVSSITDAVAAKSPY LQAVVKETLRVHPPGPLLAWARLSTQDVQLSNGMLIPAHTTAMINMWAITHDPQVWADPLEFRPERFLEEDVDIRGGDLRLAPFGAGRRVCPGKNLGMVT VATWVAKLVAGFEWLEDPDHPVDLGEVLKLSCEMKHPLQAVAVPLGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Lus10005780 [exp]	0	1
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10035235 [exp]	4.5	0.8535
AT5G07050			nodulin MtN21 /EamA-like trans...		Lus10026113 [exp]	5.4	0.8092
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10001178 [exp]	21.9	0.8511
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10006391 [exp]	23.5	0.8231
AT2G29360			NAD(P)-binding Rossmann-fold s...		Lus10010876 [exp]	23.8	0.8328
					Lus10012972 [exp]	23.9	0.8423
AT1G75240	ZF_HD	ATHB33, ZHD5	zinc-finger homeodomain 5, hom...		Lus10031885 [exp]	29.0	0.8340
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10038435 [exp]	30.6	0.8326
AT4G10490			2-oxoglutarate (2OG) and Fe(II...		Lus10031150 [exp]	32.6	0.8408
AT1G06980			unknown protein		Lus10026407 [exp]	32.9	0.8414

Compare expression of checked genes

Lus10005780 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.