Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53590 71 / 4e-16 SAUR-like auxin-responsive protein family (.1) AT4G00880 68 / 3e-15 SAUR-like auxin-responsive protein family (.1) AT3G61900 65 / 5e-14 SAUR-like auxin-responsive protein family (.1) AT2G46690 64 / 7e-14 SAUR-like auxin-responsive protein family (.1) AT4G34800 62 / 2e-13 SAUR-like auxin-responsive protein family (.1) AT5G20810 62 / 2e-12 SAUR-like auxin-responsive protein family (.1.2) AT4G34770 60 / 3e-12 SAUR-like auxin-responsive protein family (.1) AT3G03820 59 / 3e-12 SAUR-like auxin-responsive protein family (.1) AT2G21210 59 / 3e-12 SAUR-like auxin-responsive protein family (.1) AT4G34790 59 / 4e-12 SAUR-like auxin-responsive protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006820 [exp] 199 / 5e-67 AT5G53590 69 / 5e-16 SAUR-like auxin-responsive protein family (.1) Lus10010110 [exp] 65 / 4e-14 AT2G46690 124 / 1e-37 SAUR-like auxin-responsive protein family (.1) Lus10007561 [exp] 60 / 2e-12 AT4G34810 125 / 1e-38 SAUR-like auxin-responsive protein family (.1) Lus10012185 [exp] 59 / 3e-12 AT4G34770 139 / 3e-44 SAUR-like auxin-responsive protein family (.1) Lus10007560 [exp] 59 / 4e-12 AT4G34770 139 / 3e-44 SAUR-like auxin-responsive protein family (.1) Lus10042376 [exp] 59 / 6e-12 AT4G34770 136 / 3e-43 SAUR-like auxin-responsive protein family (.1) Lus10025909 [exp] 58 / 2e-11 AT4G34770 116 / 3e-35 SAUR-like auxin-responsive protein family (.1) Lus10009620 [exp] 57 / 2e-11 AT4G38840 112 / 5e-34 SAUR-like auxin-responsive protein family (.1) Lus10034888 [exp] 59 / 3e-11 AT5G20810 210 / 2e-70 SAUR-like auxin-responsive protein family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G002201 [exp] 123 / 3e-37 AT5G53590 74 / 8e-18 SAUR-like auxin-responsive protein family (.1) Potri.001G306300 [exp] 120 / 4e-36 AT5G53590 75 / 2e-18 SAUR-like auxin-responsive protein family (.1) Potri.002G176400 [exp] 71 / 2e-16 AT2G46690 145 / 2e-46 SAUR-like auxin-responsive protein family (.1) Potri.014G103300 [exp] 70 / 3e-16 AT2G46690 152 / 2e-49 SAUR-like auxin-responsive protein family (.1) Potri.015G006800 [exp] 69 / 6e-16 AT2G46690 128 / 2e-39 SAUR-like auxin-responsive protein family (.1) Potri.012G023400 [exp] 70 / 8e-16 AT2G46690 125 / 4e-38 SAUR-like auxin-responsive protein family (.1) Potri.003G167400 [exp] 66 / 6e-14 AT5G50760 100 / 4e-27 SAUR-like auxin-responsive protein family (.1) Potri.009G126400 [exp] 63 / 8e-14 AT5G18020 119 / 1e-36 SAUR-like auxin-responsive protein family (.1) Potri.009G127400 [exp] 63 / 1e-13 AT4G34770 111 / 3e-33 SAUR-like auxin-responsive protein family (.1) Potri.004G165500 [exp] 62 / 2e-13 AT4G34770 115 / 7e-35 SAUR-like auxin-responsive protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02519 [flax] [poplar] Auxin_inducible Auxin responsive protein
Representative CDS sequence Show only first row Show all	>Lus10005781 pacid=23174722 polypeptide=Lus10005781 locus=Lus10005781.g ID=Lus10005781.BGIv1.0 annot-version=v1.0 ATGCAAGAGAAGAACATGAAGATGAAGAAAGGTTGCATAGCTGTCCAAGTAGGGCTAGAGGACGAAGATGATCAAGCAATCCTTCTACCTTCAATCATGC AAGAGAAGAACATGAAGATGAAGAAAGGTTGCATAGCTGTCCAAGTAGGGTTAGAGGAAGAAGATGATCAAGCAAGTAGAAGGAAGTTTGTGATCCCAAT TTCATACCTTTACCACCCACTTTTCAAGTCTCTTCTTGACAAGGCCTATGAGGTGTTTGGCTACCATGTGGCAGGCCCACTCAGGCTGCCTTGCTCCGTC GACGACTTCCTCCACCTCCGGTGGCAGATCGAGAGGGAGTCCGACCACCACAACCACCATCAGCGCGAGCTCCACCGTGGGAGAAGCTCTGGCCACCACC ACCACCATCATCATGTTCTTCAAACTGCCTTTTCTTTCAATTCTTGTTAG
AA sequence Show only first row Show all	>Lus10005781 pacid=23174722 polypeptide=Lus10005781 locus=Lus10005781.g ID=Lus10005781.BGIv1.0 annot-version=v1.0 MQEKNMKMKKGCIAVQVGLEDEDDQAILLPSIMQEKNMKMKKGCIAVQVGLEEEDDQASRRKFVIPISYLYHPLFKSLLDKAYEVFGYHVAGPLRLPCSV DDFLHLRWQIERESDHHNHHQRELHRGRSSGHHHHHHHVLQTAFSFNSC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53590			SAUR-like auxin-responsive pro...		Lus10005781 [exp]	0	1
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Lus10038218 [exp]	5.6	0.7933
AT5G16550			unknown protein		Lus10033497 [exp]	7.0	0.7416
AT1G26800			RING/U-box superfamily protein...		Lus10037170 [exp]	14.8	0.7615
AT1G49230			RING/U-box superfamily protein...		Lus10005817 [exp]	24.2	0.7437
AT3G59910			Ankyrin repeat family protein ...		Lus10005306 [exp]	24.5	0.6696
AT1G70000	MYB		myb-like transcription factor ...		Lus10010733 [exp]	28.0	0.7522
AT5G10050			NAD(P)-binding Rossmann-fold s...		Lus10004925 [exp]	31.1	0.7118
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Lus10041300 [exp]	31.4	0.6861
AT3G12920		BRG3	BOI-related gene 3, SBP (S-rib...		Lus10031202 [exp]	33.2	0.7271
AT5G43150			unknown protein		Lus10041628 [exp]	33.5	0.7213

Compare expression of checked genes

Lus10005781 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.