Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16970 691 / 0 KU70, ATKU70 ARABIDOPSIS THALIANA KU70 HOMOLOG, KU70 homolog (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006818 [exp] 1029 / 0 AT1G16970 693 / 0.0 ARABIDOPSIS THALIANA KU70 HOMOLOG, KU70 homolog (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G107400 [exp] 787 / 0 AT1G16970 922 / 0.0 ARABIDOPSIS THALIANA KU70 HOMOLOG, KU70 homolog (.1) Potri.006G132501 [exp] 65 / 1e-12 AT1G16970 52 / 2e-08 ARABIDOPSIS THALIANA KU70 HOMOLOG, KU70 homolog (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03730 [flax] [poplar] Ku_C Ku70/Ku80 C-terminal arm CL0616 [flax] [poplar] SPOC PF02735 [flax] [poplar] Ku Ku70/Ku80 beta-barrel domain CL0306 [flax] [poplar] HeH PF02037 [flax] [poplar] SAP SAP domain CL0128 [flax] [poplar] vWA-like PF03731 [flax] [poplar] Ku_N Ku70/Ku80 N-terminal alpha/beta domain
Representative CDS sequence Show only first row Show all	>Lus10005783 pacid=23174719 polypeptide=Lus10005783 locus=Lus10005783.g ID=Lus10005783.BGIv1.0 annot-version=v1.0 ATGGATTTGGATCCTGAAGACGTATTCAAGGACGACGATGACGATGAAGATAGCGAGTTCTTCCATGCAGATGGGAAGGACGAAACTCATTTCCACATAG CAGTTAGCTGCGTTGCACAATCGCTGAAGACTCATATAATCAACAACTCGTATAATGAAATCGCCATATGTTTCTTTAACACGAGGGAGAAGAAGAATGA GCAGGATCTCAGTGGGGTGTTTATCTTTGATGTTGCTGAGAGAGAGCATTTGGATAGGCCAACTGCAAGACTTATAAAGGAATTTGACTGTGTTGAAGAA TCATTCTCGAAAGAAATCGGCAGTCAATACGGTATTGTATCTGGGTCGTGGGAGAACTCACTTTACAATGCTCTTTGGGTAGCACAAGCGCTGCTTCGCA AAGGATCAGCGAAGACAGCTGAGAAACGGATACTTCTCTTCACAAATGAAGATGATCCATTCAGGAACATCCGCGGTGTAGCTAAAGCAGACATGATACG AACTACATTGCAACGGGCTAAGGATGCTCAAGATCTTGGCATTTCAATTGAGATGCTTCCCTTGAGTCGTCCAGATGAGGATTTCAAAATTTCGACTTTC TATGCTGATTTGATCGGCTTGGAAGGTGACGATCTTCCGGAATTCATGCCCTCTGCTGGACAGAAGGGCAATAACGTGGCTGGATTCAGTGACCAATCGT CCTTTGAAGAAATATCTTTTATCTGTACCGATACTGGTGCACTGATCCAGGAACCAACAAAGCGCTATCTACGTTATAAAAATGAGGACGTCAAGTTCTC AGAAGAAGAGCTAAGGGAGATCAAAAGAGTATCGGCAGGGCATCTACGTCTTCTTGGATTCAAGCCTTTAAGCTGTTTGAAAGATTATCACAATCTAAGG CCTACGACGTTTGTTTTCCCAAGCGACAAGGAAGTGGTAGGTAGTACCTGCACTTTCATTTCCCTGCACAGAGCCATGATACAGCAACAGCGATTTGCTT TGGCATTTTACGGTATCTCAACTAATCCCCGATTGGTTGCCCTTGTTGCTCAAGATGAGATTGTTTCGGGTGGTGGCCAGATTGAGCCACCAGGCATGCA GATGATATTTCTGCCTTACTGTGAAGATATCAGAGACATAGAACGGCGTCAGGCAACCATTGATCATCAACCCGCACCACGAGCAACCGAAGAACAAATT AACAAGGCCGCCACTTTACTCAAACGGATCTACTTGAAAGACTTTTCAGTATGCCAGTTTTCTAACCCTGCGTTGCAGAGGCACTACGCAGTGCTGCAGG CACTAGCTCTCGACGAAGACGAGATGCCTGAAATCAAGGACGAAACACTGCCAGATGAAGAAGGCATGGCTAGACCGGCTGTCGATAAGGCCATAGAAGA CTTCAGAGCTTCAGTCTACGGAGAAGGTTACAACGAGGCCGATGACATTCCGGGACCCAGCGAGGCCTCGAAGAAACGGAAAGCTGCATCGGAATTCGTC ACTCAGGTATACAAGAACTACAGCTGGGAAGAACTCGCCGATGGTGGACAGCTGAAGGACTTGACAGTGGTGGAGCTGAAGTACTACTTGGCAGCGCACA AGCTCCCGCAGGCTGGGAACAAAGAAGCGCTAATCAGCAGAATCTTGACCCACATGGGGAAATGA
AA sequence Show only first row Show all	>Lus10005783 pacid=23174719 polypeptide=Lus10005783 locus=Lus10005783.g ID=Lus10005783.BGIv1.0 annot-version=v1.0 MDLDPEDVFKDDDDDEDSEFFHADGKDETHFHIAVSCVAQSLKTHIINNSYNEIAICFFNTREKKNEQDLSGVFIFDVAEREHLDRPTARLIKEFDCVEE SFSKEIGSQYGIVSGSWENSLYNALWVAQALLRKGSAKTAEKRILLFTNEDDPFRNIRGVAKADMIRTTLQRAKDAQDLGISIEMLPLSRPDEDFKISTF YADLIGLEGDDLPEFMPSAGQKGNNVAGFSDQSSFEEISFICTDTGALIQEPTKRYLRYKNEDVKFSEEELREIKRVSAGHLRLLGFKPLSCLKDYHNLR PTTFVFPSDKEVVGSTCTFISLHRAMIQQQRFALAFYGISTNPRLVALVAQDEIVSGGGQIEPPGMQMIFLPYCEDIRDIERRQATIDHQPAPRATEEQI NKAATLLKRIYLKDFSVCQFSNPALQRHYAVLQALALDEDEMPEIKDETLPDEEGMARPAVDKAIEDFRASVYGEGYNEADDIPGPSEASKKRKAASEFV TQVYKNYSWEELADGGQLKDLTVVELKYYLAAHKLPQAGNKEALISRILTHMGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16970		KU70, ATKU70	ARABIDOPSIS THALIANA KU70 HOMO...		Lus10005783 [exp]	0	1
					Lus10038266 [exp]	2.4	0.8995
AT3G12170			Chaperone DnaJ-domain superfam...		Lus10010323 [exp]	6.3	0.8936
AT3G48710			DEK domain-containing chromati...		Lus10016746 [exp]	6.5	0.8876
AT3G20260			Protein of unknown function (D...		Lus10033354 [exp]	7.6	0.9140
AT4G10890			unknown protein		Lus10003198 [exp]	11.0	0.8496
AT1G18090			5'-3' exonuclease family prote...		Lus10027250 [exp]	11.2	0.8918
AT3G20020		ATPRMT6	ARABIDOPSIS THALIANA PROTEIN A...		Lus10010162 [exp]	12.1	0.8702
AT5G22220	E2F_DP	ATE2FB, E2F1	E2F transcription factor 1 (.2...		Lus10013321 [exp]	13.0	0.8553
AT4G08630			unknown protein		Lus10001720 [exp]	13.1	0.8503
AT5G64630		MUB3.9, NFB1, N...	FASCIATA 2, Transducin/WD40 re...		Lus10033489 [exp]	15.0	0.8848

Compare expression of checked genes

Lus10005783 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.