Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39400 1234 / 0 DWF2, CBB2, BIN1, BRI1, ATBRI1 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) AT1G55610 889 / 0 BRL1 BRI1 like (.1.2) AT3G13380 884 / 0 BRL3 BRI1-like 3 (.1) AT2G01950 849 / 0 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) AT5G07280 514 / 2e-162 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G74360 466 / 5e-145 Leucine-rich repeat protein kinase family protein (.1) AT1G17230 433 / 5e-133 Leucine-rich receptor-like protein kinase family protein (.1) AT4G20140 426 / 6e-129 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT3G49670 419 / 2e-128 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT3G24240 419 / 3e-127 Leucine-rich repeat receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006817 [exp] 1964 / 0 AT4G39400 1356 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10033533 [exp] 1425 / 0 AT4G39400 1492 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10020835 [exp] 1414 / 0 AT4G39400 1486 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10038726 [exp] 835 / 0 AT2G01950 1501 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10039132 [exp] 829 / 0 AT2G01950 1503 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10038875 [exp] 484 / 4e-150 AT5G07280 1248 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10014996 [exp] 473 / 5e-146 AT5G07280 1264 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10019722 [exp] 437 / 1e-134 AT1G72300 1189 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10016395 [exp] 434 / 3e-133 AT1G72300 1170 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G086500 [exp] 1320 / 0 AT4G39400 1398 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.007G078100 [exp] 1299 / 0 AT4G39400 1426 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.011G169600 [exp] 925 / 0 AT1G55610 1500 / 0.0 BRI1 like (.1.2) Potri.001G472900 [exp] 914 / 0 AT1G55610 1485 / 0.0 BRI1 like (.1.2) Potri.008G140500 [exp] 860 / 0 AT2G01950 1535 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.010G101100 [exp] 843 / 0 AT2G01950 1510 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.012G139000 [exp] 505 / 7e-158 AT5G07280 1377 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.015G141200 [exp] 493 / 2e-153 AT5G07280 1347 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.003G074000 [exp] 448 / 1e-138 AT1G72300 1215 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G398500 [exp] 445 / 9e-138 AT5G53890 1268 / 0.0 phytosylfokine-alpha receptor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10005784 pacid=23174708 polypeptide=Lus10005784 locus=Lus10005784.g ID=Lus10005784.BGIv1.0 annot-version=v1.0 ATGACGAACCAACCCCATTTCCTCCTCCTCCTCATCTCCCTCTCCCTCCTCCTCACCGCCGTTTCTCCGGCGACTACTAAAGATACCCTCCTCACCTTCA AATCCTCCTTACCAAACCCATCTCTCCTTCCCAACTGGCTTCCCAACCAAAACCCTTGCTCCTTCACCGGCGTGAAATGTTCATCTCCTTCCAACGCTGT ATCCTCCGTAGACCTCAGCTTCATCCCTTTGAGCACTGCAAATTTCACCTCCCTTTTATCAATCGCCACCCTCCAATCCTTATCCCTCCGCTCTTCCAAC CTCACCGGCGGCTCAACCGAGCCGCCGGTGCATTGCTCATCTGTTTTAACCGAGCTAGATCTCTCTGGAAACTCCATTTCTGGTTCTCTCTCGCCGTTGA TTACATCCTGCTCTGCTCTGAAATCCTTGAACCTCTCAAGCAACTCCTTTGGTCCGGACCTGAACTTTTCCCTCCTCGATTCACTTGAAACAGTTGATCT CTCGTGGAATAAGCTTCTCTCCGGTGGTCAAAACGGCGTGTCGTTTGGTGGGTGTGGAGAGCTGAAGGTGTTAGCACTCAGAGGGAATAAGCTCTCCTCC GGCGGGGGAGACAGAGGACTCGACCTCTCCAGGTGCGAGAAATTGGAGTATCTTGATATCTCGTCCAACAATTTCTCCTCTCTGGGTCCTGATTTCAGCA GCTGCGAGAAATTGGAGTACCTCGACATCTCCGGCAATAGATTCTCCGGTGAGCTTGGCACTCTCCTATCTACCTGCGAGAATCTCGCGTTTTTAAACGT CTCCATCAACCAATTCTCCGGCGAAATCCCTGCCGTAGGGATAAAGAAGAAGTTGAAGTCCCTGTATCTGTCCGGCAACCAATTCCACGGTGAGATTCCG GTGAGTCTCGTCGACGATTTGTGTCCAGGTCTTGTGAATCTCGATCTATCTTTCAACAATCTCACCGGTTCTATTCCTTCTGGGTTTGAAAGATGTTCAT TGTCGCTGGAAAGTCTTGACCTTTCGGTCAACAACTTCACCAGTGAGCTCCCTGTTTCTACACTGCTGAAATTAAAACGGCTGAAGAAGATTGATCTCGC GTTCAACAACTTCGCCGGCGGGCTCCCCGATTCGTTCTCCGAGCTTGCCGATTTGGAAATCCTAGATGTGAGCTCCAACGATCTGAGTGGAGAAATTCCA ACCTCGATTTGCAGGGAGAGCAAGCTGAAAGAGCTTTACTTACAGAACAATCAGTTCACTGGTAAGATTCCGGAATCATTGAACAACTGTACGGAGTTGA GGGCTCTTCATTTGAGCTTCAATTATTTAACCGGTACGATCCCTCCAAGCTTGGGATTACTGAGCAATCTTCAGGATTTGAAGCTCTGGTTCAATCAGCT CCACGGCGAAATCCCGCTGGAGATAATGTCGATCAAGACGTTGACTGCTTTGATCCTCGACTTCAACGAGCTTACCGGTTCGATTCCTTCTAGTATAAGC AACTGTACTAACCTGAACTGGATTTCATTGTCGAACAATCGTCTCGAGGGAGAGATTCCAGGTTCAATCGGGCAGCTTTCGAGCCTCGCGATCTTGAAGC TGAGCAATAACTCGTTGACTGGTCCGATCCCACCGGAGCTCGGCGACTGCAGGAGCTTGATATGGTTGGATTTGAACAGCAATCGATTAACCGGTTCGAT TCCGCCTGATCTGTTCAAGCAATCGGGCAACATTGCTGTGAACTTCATCACAGGGAAGAGATACGTTTACTTGAAGAATGACAAGAGCGAGCATTGTCAC GGTACTGGAAACTTGCTCGAATTCGCAGGGATAAGATCCGAGAATCTCGACAGGGTTACGACAAGGAATCCTTGCAACTTCACCAGGATTTACAACGGCC ACACTCAGCCGACGTTCAACAACAACGGATCGATGATCTTCCTTGATCTTTCATACAACGAGCTGTCGGGAGCCATTCCGAAAGAGGTACGGACAATGTC GTATCTCTTCATTATGAATCTGGCCCATAACAACCTCTCCGGCGAAATCCCTGAAGAGCTCGGCCAGCTGAAAGGTCTCAACATTCTCGACCTGTCGAGC AACAAACTCGAAGGCCGGATTCCTCAGTCGATGACCGGGATGTCGTTGCTGAACGAGATCGACATGTCGAATAATAATCTTGTCGGAATGATCCCTGAGA TGGGCCAATTTGAGACGTTCCAAGCTCAAAGCTTCATCAACAATGCCGGCCTATGTGGGATCCCTCTCCCACCCTGTGGTGGATCTGGACGTGATCCCGG TCCATCGAGGTCCTCGTCCCGTAGGACAAGGACCTCGTTGGCCGCGAGTATCGCGATGGGACTCGTGGTGTCGATGTTCTTCATCCTCGCTGTGTTCCTC TTTGTAATGGAGCTTAAGAAGAGGAAGAAAATAAAGGAATCTGATGATGTGTTCATGGAGAATTCTCATAATCATTCTGGGAATGGATGGAAGTTGACGG GAGCGAGGGAGGCTTCGTTAAGCATAAACCTCGCTACGTTCGAGACTCCGTTACGGAGGCTGACGTTCGCCGATCTCCTCGAGGCGACCAACGGCTTCCA CAATGACAGTCTCATAGGTTCCGGTGGGTTCGGAGACGTGTACAAGGCTCGGCTGAAAGACGGCAATGTGGTGGCGATAAAGAAGCTGATCCACGTAAGC GGCCAGGGCGATCGAGAATTCACGGCCGAAATGGAGACGATCGGGAAGATCAAGCACCGGAACCTCGTTCCGTTGCTCGGATACTGCAAAATTGGGGAAG AGAGGCTGCTTGTTTACGAGTACATGAAGTATGGAAGCTTGGAAGACGTGTTACATCGCTCCGGGACCGGTACCGGTACCGGAATGATCAAGCTCGATTG GAACGCGAGGCGGAGGATCGCGATTGGGGCGGCGAGAGGTTTAGCCTTCCTGCACCATAACTGCATCCCTCATATTATCCACCGCGACATGAAGTCTAGC AACGTACTTCTGGACGAGAATCTCGATGCGAGGGTGTCCGATTTCGGGATGGCAAGGCTGATGAGCGCGATGGACACACACTTAAGCGTGTCCACATTAG CAGGCACTCCCGGGTACGTCCCTCCCGAGTACTACCAGAGCTTCAAATGCTCAGTGAAAGGTGACGTGTACAGTTATGGAGTAGTCCTGCTCGAGCTTTT GACAGGAAAGAGACCGACCGATTCAGAGGATTTCGGGGATAATAACCTTGTAGGGTGGGTGAAGCAGCATGCCAAGCTGAAAATAACCGATGTGTTCGAT CCGGAACTGATGAAGGAGGATCCGGGGCTGGTGATCGAGCTTTTGGAGCATTTGAAGGTGGCGAGTGCTTGTCTAGATGACCGGCCTTGGAAGCGGCCGA CGATGATCCAGGTCATGGCTATGTTCAAGGAGATTCAAGCTGGTTCAGGGCTGGATCCCGAGTCGATTGGTGGCGGTGGTGTAGAGATGGTGGTGATTAA AGAGGTGCCTGAACAAGGGTGCAAGTAG
AA sequence Show only first row Show all	>Lus10005784 pacid=23174708 polypeptide=Lus10005784 locus=Lus10005784.g ID=Lus10005784.BGIv1.0 annot-version=v1.0 MTNQPHFLLLLISLSLLLTAVSPATTKDTLLTFKSSLPNPSLLPNWLPNQNPCSFTGVKCSSPSNAVSSVDLSFIPLSTANFTSLLSIATLQSLSLRSSN LTGGSTEPPVHCSSVLTELDLSGNSISGSLSPLITSCSALKSLNLSSNSFGPDLNFSLLDSLETVDLSWNKLLSGGQNGVSFGGCGELKVLALRGNKLSS GGGDRGLDLSRCEKLEYLDISSNNFSSLGPDFSSCEKLEYLDISGNRFSGELGTLLSTCENLAFLNVSINQFSGEIPAVGIKKKLKSLYLSGNQFHGEIP VSLVDDLCPGLVNLDLSFNNLTGSIPSGFERCSLSLESLDLSVNNFTSELPVSTLLKLKRLKKIDLAFNNFAGGLPDSFSELADLEILDVSSNDLSGEIP TSICRESKLKELYLQNNQFTGKIPESLNNCTELRALHLSFNYLTGTIPPSLGLLSNLQDLKLWFNQLHGEIPLEIMSIKTLTALILDFNELTGSIPSSIS NCTNLNWISLSNNRLEGEIPGSIGQLSSLAILKLSNNSLTGPIPPELGDCRSLIWLDLNSNRLTGSIPPDLFKQSGNIAVNFITGKRYVYLKNDKSEHCH GTGNLLEFAGIRSENLDRVTTRNPCNFTRIYNGHTQPTFNNNGSMIFLDLSYNELSGAIPKEVRTMSYLFIMNLAHNNLSGEIPEELGQLKGLNILDLSS NKLEGRIPQSMTGMSLLNEIDMSNNNLVGMIPEMGQFETFQAQSFINNAGLCGIPLPPCGGSGRDPGPSRSSSRRTRTSLAASIAMGLVVSMFFILAVFL FVMELKKRKKIKESDDVFMENSHNHSGNGWKLTGAREASLSINLATFETPLRRLTFADLLEATNGFHNDSLIGSGGFGDVYKARLKDGNVVAIKKLIHVS GQGDREFTAEMETIGKIKHRNLVPLLGYCKIGEERLLVYEYMKYGSLEDVLHRSGTGTGTGMIKLDWNARRRIAIGAARGLAFLHHNCIPHIIHRDMKSS NVLLDENLDARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFKCSVKGDVYSYGVVLLELLTGKRPTDSEDFGDNNLVGWVKQHAKLKITDVFD PELMKEDPGLVIELLEHLKVASACLDDRPWKRPTMIQVMAMFKEIQAGSGLDPESIGGGGVEMVVIKEVPEQGCK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Lus10005784 [exp]	0	1
AT3G05980			unknown protein		Lus10002455 [exp]	4.0	0.8437
AT3G25570			Adenosylmethionine decarboxyla...		Lus10040973 [exp]	5.7	0.8221
AT1G10850			Leucine-rich repeat protein ki...		Lus10013073 [exp]	6.9	0.8378
AT5G06750			Protein phosphatase 2C family ...		Lus10021056 [exp]	7.1	0.8222
AT2G45470		AGP8, FLA8	FASCICLIN-like arabinogalactan...		Lus10009235 [exp]	12.2	0.8435
AT1G62440		LRX2	leucine-rich repeat/extensin 2...		Lus10028097 [exp]	15.5	0.7985
AT4G02100			Heat shock protein DnaJ with t...		Lus10010272 [exp]	15.5	0.8219
AT1G10850			Leucine-rich repeat protein ki...		Lus10029075 [exp]	15.9	0.8399
AT5G16390		CAC1-A, BCCP-1,...	BIOTIN CARBOXYL-CARRIER PROTEI...		Lus10020619 [exp]	17.9	0.8318
AT4G02100			Heat shock protein DnaJ with t...		Lus10036335 [exp]	23.8	0.8249

Compare expression of checked genes

Lus10005784 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.