Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64790 565 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT1G64760 491 / 3e-164 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G19440 486 / 3e-162 O-Glycosyl hydrolases family 17 protein (.1) AT5G18220 483 / 1e-160 O-Glycosyl hydrolases family 17 protein (.1) AT3G04010 472 / 2e-156 O-Glycosyl hydrolases family 17 protein (.1) AT5G58090 458 / 3e-151 O-Glycosyl hydrolases family 17 protein (.1) AT4G31140 444 / 5e-146 O-Glycosyl hydrolases family 17 protein (.1) AT3G24330 443 / 2e-145 O-Glycosyl hydrolases family 17 protein (.1) AT5G20870 429 / 5e-140 O-Glycosyl hydrolases family 17 protein (.1) AT4G17180 358 / 4e-113 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006811 [exp] 1002 / 0 AT5G64790 565 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10019354 [exp] 660 / 0 AT3G14640 281 / 2e-88 "cytochrome P450, family 72, subfamily A, polypeptide 10", cytochrome P450, family 72, subfamily A, polypeptide 10 (.1) Lus10019177 [exp] 529 / 5e-178 AT2G26710 373 / 4e-124 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10019176 [exp] 525 / 2e-176 AT3G14620 342 / 8e-112 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) Lus10036816 [exp] 524 / 3e-176 AT3G14620 339 / 8e-111 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) Lus10036818 [exp] 517 / 2e-173 AT2G26710 369 / 2e-122 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10036817 [exp] 523 / 1e-168 AT2G26710 382 / 3e-121 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10002633 [exp] 498 / 2e-166 AT1G64760 681 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10020261 [exp] 493 / 1e-164 AT1G64760 676 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G078900 [exp] 596 / 0 AT5G64790 528 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.010G139600 [exp] 510 / 8e-171 AT2G26710 395 / 6e-133 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.013G059700 [exp] 501 / 4e-168 AT1G64760 701 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.019G032900 [exp] 494 / 4e-165 AT1G64760 698 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.010G139400 [exp] 489 / 1e-162 AT2G26710 402 / 2e-135 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139200 [exp] 464 / 4e-153 AT2G26710 369 / 6e-123 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.019G071200 [exp] 464 / 4e-153 AT2G26710 346 / 9e-114 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.018G000900 [exp] 462 / 1e-152 AT4G31140 667 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.010G139300 [exp] 461 / 8e-152 AT2G26710 372 / 1e-123 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.006G280700 [exp] 456 / 5e-150 AT4G31140 676 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07983 [flax] [poplar] X8 X8 domain CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [flax] [poplar] PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10005788 pacid=23174733 polypeptide=Lus10005788 locus=Lus10005788.g ID=Lus10005788.BGIv1.0 annot-version=v1.0 ATGATCAAATCCACGCGATCTCCTCTGCTCATAGCAGGGGACAATCGTCGTGACAAGATTTGTTTATGGGCAACATTGTTGTTGATCGTCACAATCACAA ATGTTTCCCCGGTGTTCTCTGCAACCAATTCATCGTTGTCGGTTGTGCAGGGGGTCGGGGTCAATTGGGGGAGCATCACGTCGCACCCTATGTCGCCAGA CATCGTGGTACAGATGTTGAAAGACAACGGGTTCAAGAAGTTGAAGCTTTTCGAGTCGGATTCGTACACGGTTAGCAAATTTGCCGGCACCGACATCGAG GTGATGCTCGGGATCCCGAATAACCAACTCAATGACCTAGCCAAGGATTATGACAATGCCAAGGATTGGGTGAAGGAGAATGTCTCGGATCATATGTCTA ATGAGAAAGATAAGCACGTCAATATAAAGTATGTGGCGGGAGGAAACGAGCCATTTCTACTAAGCTACTCCGACAAGTACACAAAGGACTTATTCCCAGC AATGCAGAACATACAAAAGGCCCTAAACGAAGCCGGGTACGGCAACACAATCAAAGCTACCGTGCCGTTGAATGCTGACGTGTACGAGTCGAACTCGAAC AAGCCGTCGGATGGAAACTTCCGGAGCAACGTGAAGGACCAAATGAAGGCAATAATCAAGTTCCTCCACCAGAACAAGGCCCCCATTTTGGTCAACATCT ACCCCTTTCTCAGCCTCTACCAGTCCTCCAACTTCCCGTCGTCGTTCGCGTTTTTCGACGAAAACGGGAGGAAAGTGTACGACAAGAACGTGGAGTACTC GAACGTGTTCGACGCAAATTACGACACACTCGTGTACGCACTGAAGAAAAATGGGTACCCCGACCTTAAAATTATCGTCGGGGAGGTCGGGTGGCCCACA GCGGGCCACAAGTACGCTACGCCCGAGTATGCTGAGAAGTTTTACTCGGGGTTGATGAAAAAGCTTGCAGGAAATAAAGGGACCCCACTCCGGCCCGGGA AACTAGATGTCTATCTGTTTGCACTGATGGATGAAGACCAGAAAAGTATCGAGCCGGGCCCGTTCGAAAGGCACTGGGGCCTGTTCGCGTTCGACGGGAA ACCTAAATTCCCCGTCGATTTATCCGGAAAGGGGAACGACAAGATGCTGATCGCAGCCAAAGGGGTCCAGTACCTGCCGGCGCAGTGGTGCATACTAAAC CCGGACGCGTCAAACCCTGTGGGGCTCGACGATGCGTTGGGGTACGCTTGCGCGTACGGAGACTGCACGAGCTTGAAACCGGGGTCTCCCTGCGCCGACC TGTCCAAGAGCTGGCAGGCATCTTACGCGTTCAACATGTACTACCAGATCAACGACCAGGACGTGGATGCCTGCGATTTCAACGGGCTGGCCGCACTGGT GAAGACCAATGCGTCCCGCGGGAACTGTCTGTTCCCAGTCCAGATTGTGAGCGGCGGATGGAGGATCGAAAGTGGTCGTGGTGTTAGATTAGTAGCAAGC ATCTTAGTGCTAATGGGCATCTTGACAAACTACATCAGCTGGCCCGGTATGGAAATCATCACCGTCGTCATTACCATCATCCTGAGCGCTAGTTTTTCGC TCTACATCGTCAGATTCCTGCACAAGCAGATATGGAAGCCTTGGAAGACCCAGGAGTTGCTTGCATCTCAAGGAATCAACGGTCCAGGTTACAGATTCTT GGTCGGCAACGCCAGAGAAATCGTCCGACTCAGAGCAGAGACGTTGGGTAAACCCATGCCAGCGATTTCCCACGACTTGGTTCTCAGAGTTTTGCCTGAA GTCCACTACTGGGTGAAGCAATACGGGAAGACTTTTGTGTATTGGATCGGACATCAAGCTCACTTGGTAGTGACGGATCCGGACATGGTTAAGCAAGTTT TATTTGATAAAGATGGAAACTTCCCGAAAGCCAAATGGGGATTTGTTTATGCTTCCAAGCTTATGGGCAATGGGCTTGTGACTAATGAGGGTGAGAACTG GTCCAAGATCAAGAAGCTTGCTAATGCCTCCTTCCATGGCGTAAAGCTTAAAAGTATGGTGCCGGAAATGATTGATTCGGCCGATAACATGCTGAAGAGA TGGAAGAACAAGGAGGGAGTAGGGGAAGAGATCGAGGTTTCTGAAGAGTTCAGGATGCTGACAGGCGAAATGATGTTGAGGATCGCTTTCGGGACTAGTT TCGACGAAGGAAGACAGATCTTTGACATGATTTTCAAGATGAGATTGTTAGTTGAGAAGAACGTCTTCAAGTTCAGACTTCCAATCGTCAGCAAGATTTT CAAGAATCGTGATTACGGGGAAGCTGTCAGGCTCGAACAGGGGATTCGAGCTTGCGTTTTGGAAATCGTGAGCAAGAGAGAAAAGAGTCATGATGTGATC AAAGACGATTATCTCGGCCTCCTTATACAAGCTCACCGTGAACGAGATGAATCGAAGAAGATTTCGATTGACGATCTGGTTGATGAGTTCAAAACGTTGT ACTTAGCGGGACACGAAACGACGTTCATCCTGCTTTCTTGGATTGTCCTGCTTCTGGCAATCCATCAGGACTGGCAACAAGAGGCCAGAAACGAAGTTTT CAGTGTCTTTGGTGGTGACAAATTTCCTGATGTTGATGGGATTGCGAAGCTCAAAGTTATGGGGATGATCATCAACGAAACTCTAAGGCTATACCCTCCC GTAACAGCATTGGGGGTGCGAAGAATCGACGTCGAAAACGAAGCGACGCTTGGGAACCTCACTCTCCATGCTGACATCAGACTGCAAATTCCAATTTTAT GTCTCCATCACGATCCCGAAATATGGGGGGAAGATGCAAACCTATTCAAGCCCGAAAGATTCTCTGAAGGCATTGCTAAAGCTACAAACAATAACCTTGC CACCTTCATTCCCTTCGGCATGGGCCCCCGAAACTGCGTGGGGGTCGACATTGCCAACAACATCGTGAGAGTTGCACTTTCAATGATTCTACAGCGCTTT TCTTTCACGTTGTCGCCCGGTTATGTCCATTCGCCACACCCTTACATCCCGGTTAGTCCCGGAAAGGGAGTTCAGGTGATCTTGCATGCCCTGTAA
AA sequence Show only first row Show all	>Lus10005788 pacid=23174733 polypeptide=Lus10005788 locus=Lus10005788.g ID=Lus10005788.BGIv1.0 annot-version=v1.0 MIKSTRSPLLIAGDNRRDKICLWATLLLIVTITNVSPVFSATNSSLSVVQGVGVNWGSITSHPMSPDIVVQMLKDNGFKKLKLFESDSYTVSKFAGTDIE VMLGIPNNQLNDLAKDYDNAKDWVKENVSDHMSNEKDKHVNIKYVAGGNEPFLLSYSDKYTKDLFPAMQNIQKALNEAGYGNTIKATVPLNADVYESNSN KPSDGNFRSNVKDQMKAIIKFLHQNKAPILVNIYPFLSLYQSSNFPSSFAFFDENGRKVYDKNVEYSNVFDANYDTLVYALKKNGYPDLKIIVGEVGWPT AGHKYATPEYAEKFYSGLMKKLAGNKGTPLRPGKLDVYLFALMDEDQKSIEPGPFERHWGLFAFDGKPKFPVDLSGKGNDKMLIAAKGVQYLPAQWCILN PDASNPVGLDDALGYACAYGDCTSLKPGSPCADLSKSWQASYAFNMYYQINDQDVDACDFNGLAALVKTNASRGNCLFPVQIVSGGWRIESGRGVRLVAS ILVLMGILTNYISWPGMEIITVVITIILSASFSLYIVRFLHKQIWKPWKTQELLASQGINGPGYRFLVGNAREIVRLRAETLGKPMPAISHDLVLRVLPE VHYWVKQYGKTFVYWIGHQAHLVVTDPDMVKQVLFDKDGNFPKAKWGFVYASKLMGNGLVTNEGENWSKIKKLANASFHGVKLKSMVPEMIDSADNMLKR WKNKEGVGEEIEVSEEFRMLTGEMMLRIAFGTSFDEGRQIFDMIFKMRLLVEKNVFKFRLPIVSKIFKNRDYGEAVRLEQGIRACVLEIVSKREKSHDVI KDDYLGLLIQAHRERDESKKISIDDLVDEFKTLYLAGHETTFILLSWIVLLLAIHQDWQQEARNEVFSVFGGDKFPDVDGIAKLKVMGMIINETLRLYPP VTALGVRRIDVENEATLGNLTLHADIRLQIPILCLHHDPEIWGEDANLFKPERFSEGIAKATNNNLATFIPFGMGPRNCVGVDIANNIVRVALSMILQRF SFTLSPGYVHSPHPYIPVSPGKGVQVILHAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64790			O-Glycosyl hydrolases family 1...		Lus10005788 [exp]	0	1
AT2G36190		ATCWINV4	cell wall invertase 4 (.1)		Lus10014217 [exp]	1.4	1.0000
AT5G14760		AO	L-aspartate oxidase (.1)		Lus10018901 [exp]	2.4	1.0000
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10027891 [exp]	3.2	1.0000
AT5G56790			Protein kinase superfamily pro...		Lus10000773 [exp]	5.9	1.0000
AT5G49900			Beta-glucosidase, GBA2 type fa...		Lus10023340 [exp]	6.9	1.0000
					Lus10024762 [exp]	8.0	1.0000
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10029930 [exp]	9.2	1.0000
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Lus10003438 [exp]	9.5	1.0000
					Lus10033834 [exp]	9.7	1.0000
					Lus10023520 [exp]	9.9	1.0000

Compare expression of checked genes

Lus10005788 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.