Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17570 291 / 2e-97 Undecaprenyl pyrophosphate synthetase family protein (.1) AT5G60510 251 / 3e-82 Undecaprenyl pyrophosphate synthetase family protein (.1) AT5G60500 246 / 2e-80 Undecaprenyl pyrophosphate synthetase family protein (.1) AT5G58784 123 / 1e-32 Undecaprenyl pyrophosphate synthetase family protein (.1) AT5G58780 120 / 2e-31 Undecaprenyl pyrophosphate synthetase family protein (.1) AT2G23410 116 / 6e-30 ACPT cis-prenyltransferase (.1) AT5G58782 113 / 6e-29 Undecaprenyl pyrophosphate synthetase family protein (.1) AT5G58770 112 / 1e-28 Undecaprenyl pyrophosphate synthetase family protein (.1) AT2G23400 103 / 2e-25 Undecaprenyl pyrophosphate synthetase family protein (.1) AT3G14630 81 / 1e-16 CYP72A9 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032757 [exp] 355 / 7e-123 AT2G17570 344 / 1e-119 Undecaprenyl pyrophosphate synthetase family protein (.1) Lus10002788 [exp] 352 / 1e-121 AT2G17570 342 / 9e-119 Undecaprenyl pyrophosphate synthetase family protein (.1) Lus10005788 [exp] 135 / 8e-35 AT5G64790 565 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10038313 [exp] 125 / 3e-33 AT5G58770 351 / 8e-122 Undecaprenyl pyrophosphate synthetase family protein (.1) Lus10019354 [exp] 129 / 4e-33 AT3G14640 281 / 2e-88 "cytochrome P450, family 72, subfamily A, polypeptide 10", cytochrome P450, family 72, subfamily A, polypeptide 10 (.1) Lus10036178 [exp] 127 / 4e-33 AT5G58770 357 / 7e-123 Undecaprenyl pyrophosphate synthetase family protein (.1) Lus10036818 [exp] 105 / 1e-24 AT2G26710 369 / 2e-122 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10019175 [exp] 103 / 2e-24 AT3G14620 318 / 1e-103 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) Lus10036816 [exp] 103 / 5e-24 AT3G14620 339 / 8e-111 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G100800 [exp] 225 / 1e-70 AT2G17570 243 / 2e-78 Undecaprenyl pyrophosphate synthetase family protein (.1) Potri.002G039400 [exp] 195 / 9e-61 AT2G17570 259 / 1e-86 Undecaprenyl pyrophosphate synthetase family protein (.1) Potri.001G312700 [exp] 120 / 3e-31 AT5G58770 294 / 2e-99 Undecaprenyl pyrophosphate synthetase family protein (.1) Potri.009G045500 [exp] 109 / 2e-27 AT5G58770 325 / 1e-111 Undecaprenyl pyrophosphate synthetase family protein (.1) Potri.001G250900 [exp] 108 / 7e-27 AT5G58770 313 / 1e-106 Undecaprenyl pyrophosphate synthetase family protein (.1) Potri.010G139500 [exp] 101 / 1e-23 AT3G14620 283 / 4e-90 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) Potri.010G139600 [exp] 99 / 1e-22 AT2G26710 395 / 6e-133 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.019G014407 [exp] 99 / 1e-22 AT2G26710 389 / 3e-130 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139400 [exp] 98 / 2e-22 AT2G26710 402 / 2e-135 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139300 [exp] 97 / 4e-22 AT2G26710 372 / 1e-123 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01255 [flax] [poplar] Prenyltransf Putative undecaprenyl diphosphate synthase PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10005789 pacid=23174712 polypeptide=Lus10005789 locus=Lus10005789.g ID=Lus10005789.BGIv1.0 annot-version=v1.0 ATGCCATTGGACAGAGATCGCCTATTCAAGCCCGAGAGATTCTCCGAAGGCGTTGCGAAAGCCACAAACAATAACCCTAGTGCTTTCATTACCTTCGGCT TGGGGCCCCGAAACTGCGTGGGGATCGACCTTGCCAACAACATAGCGAGAGTTGCATTTTCGATGATTCTGCAGCGCTTTTCTTTCACATTTTCGCCCGG TTATGTCCATTCCCCTCGCCCTTATATCCTGGTTAGTCCCGCAAAATTCTTCGTTATGAAACAAGCAAATGATAGAGAAAGTGGGTTGGTCGGAAGGCTA GGTGGGTTCATGAGGAGCTACCTCTTCAAAGTCCTCCGGATCGGTCCGATTCCAACCCATTTATCCTTCATAATGGACGGGAACCGGAGGTTTGCTAAGA AGATGAACATAGGCGAAGGAGACGGGCACAGGGCCGGCTTCTTCGCCTTGATCTCGATGTTAAGGTACTGCTACGAACTGGGTGTGACGTACGTCTCGAT TTATGCTTTTAGCATCGACAACTTCAAGAGGCGTCCTGAGGAAGTCAAGATCATCATGGACCTGATCCTCGAGAAAATCGAAGGTTTGCTAGAGGAAGGC AGCCTAGCGAACCAGTACGGAGTGCGGGTCTACTTCGTTGGCAACCTAAAGCTCCTGACTGAACCGGTCAGGGTTGCGGCCGAGAAGGTCATGGAGTCAA CATCACGCAACACCGAGCGCGTGCTCCTGATAGGCCTGGCCTACACATCCAGAGACGAGATCGTGCACTCGGTGCACCGGGCGTGCAGGGACAGGCTCGA AGATCTTGACGACGACGACAAGATCGAGGTGGCGGGCATAGAGAAGCACATGCACATGGGCGTGACACCTGATCCTGACCTCTTAATGAGGAGCTCAGGG GAGAAGAGGCTGAGTAACTATCAGCTTTGGCAGACTACTGAGTGTTTGTTGTACGCTCCCAGGGCATTGTGGCCTGAGATTGGGCTTTGGCATATGGTTT TTGGGATACTCAAGTACCAACGTGGGTTTGGTTACTTTGAGAAGAAGGAGAAGAGATAG
AA sequence Show only first row Show all	>Lus10005789 pacid=23174712 polypeptide=Lus10005789 locus=Lus10005789.g ID=Lus10005789.BGIv1.0 annot-version=v1.0 MPLDRDRLFKPERFSEGVAKATNNNPSAFITFGLGPRNCVGIDLANNIARVAFSMILQRFSFTFSPGYVHSPRPYILVSPAKFFVMKQANDRESGLVGRL GGFMRSYLFKVLRIGPIPTHLSFIMDGNRRFAKKMNIGEGDGHRAGFFALISMLRYCYELGVTYVSIYAFSIDNFKRRPEEVKIIMDLILEKIEGLLEEG SLANQYGVRVYFVGNLKLLTEPVRVAAEKVMESTSRNTERVLLIGLAYTSRDEIVHSVHRACRDRLEDLDDDDKIEVAGIEKHMHMGVTPDPDLLMRSSG EKRLSNYQLWQTTECLLYAPRALWPEIGLWHMVFGILKYQRGFGYFEKKEKR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17570			Undecaprenyl pyrophosphate syn...		Lus10005789 [exp]	0	1

Compare expression of checked genes

Lus10005789 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.