Plant FIBer expression Database

Lus10005791 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006808
[exp]
303 / 7e-102 ND /
Lus10006809
[exp]
173 / 3e-52 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G114100
[exp]
561 / 0 ND /
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF11805 DUF3326 Protein of unknown function (DUF3326)
Representative CDS sequence
>Lus10005791 pacid=23174740 polypeptide=Lus10005791 locus=Lus10005791.g ID=Lus10005791.BGIv1.0 annot-version=v1.0
ATGGTGGCGGCACTTCTCCACCATTGCCGGCCACTCTTCCGGCCGCCGGCGGACTCCTCACAACCATCCATCCGAATCAGAATTCCCCGAGCTGCTTCTT
TTCGATGTTCGAGCAAGGTTAGTCGCGCTTTAGGTAGCAAGGATTACACGAGCGTGATGATAGTCCCTACCGGTGTTGGAGCTTCAATCGGCGGATTCGC
CGGCGACGCACTGCCTGTTGCTCGCGCCTTGTCTTCCGTCGTCGACTGCCTCATAACTCACCCCAATGTACTGAATGCGGCAATGATGTACTGGCCGATG
CCGAATGTGTTGTATGTTGAAGGTTATGCTCTTGACAGATTTGCAGAAGGGAATTGGGGACTTCAGCCTGTTCATCAAAATAGAGTGGGGTTAGTTCTTG
ATTGTGGGATGGAGGAAGAACTCAGAATCCGCCATTTACAAGTGGCTGATGCTGCCAGGGCTTCTCTTGGGTTACCTGTTGTGGTATACACTCTCACTGA
CACGCCATTAGAGGTGGAGAAGTGGGTCGATCCAATTAGTGGTCAGTCAACAGGGAGAATAAGGCACCCTGATTCTTTACTGAGATCTGTTCGGACGTTG
ATTAGTGAATCTCAAGTGAATGCTGTTGCTGTTGTGGCTCGGTTTCCTGATGATGATGTTGACGACGTTGATGAGTATCGACAAGGCATGGGCATAGACG
TGTTGGCTGGAGTAGAAGCAATTATAAGCCATCTTGTAGTGAAGGAGTTCCAGACTCCTTGTGCTCATGCTCCCGCAATGCTTCCCCTTCCCTTAACCCG
AACGCTTTCCCCAAAGTCAGCCGCTGAGGAGATAGGCTACACATTCTTACCATGTGTGCTTGTGGGACTAAGCAAAGCACCTCAGTACAAAGTCAACTCT
CAGTCATCGGAATCCGATTGTATATATGCCAGCGATGTAGACAGTGTAGTTGTTCCCCTGGACGCCTGTGGAGGAGATGCTACCCTTGCTTTTGCTAGAA
GCAAAGGAAACAAGCCACTAATTGTTGCTGTGGAGGAAAATGAGACGGTCCTCGACAGTACACCAGATAAACTCGGGATTGAAGTGATCAAGGTGTCGAA
CTACTGGGAAGCAATAGGTATTATAGCTGCTCACAAGGCCGGAATCAACCCACATTCTCTAAGACGAGACAGAATCTCAAACATCCATCACCGCAAGAAC
AGTTCCGTTAGGCAGACTAATGGATTCACAGCTTCCATCCCACATTCATAG
AA sequence
>Lus10005791 pacid=23174740 polypeptide=Lus10005791 locus=Lus10005791.g ID=Lus10005791.BGIv1.0 annot-version=v1.0
MVAALLHHCRPLFRPPADSSQPSIRIRIPRAASFRCSSKVSRALGSKDYTSVMIVPTGVGASIGGFAGDALPVARALSSVVDCLITHPNVLNAAMMYWPM
PNVLYVEGYALDRFAEGNWGLQPVHQNRVGLVLDCGMEEELRIRHLQVADAARASLGLPVVVYTLTDTPLEVEKWVDPISGQSTGRIRHPDSLLRSVRTL
ISESQVNAVAVVARFPDDDVDDVDEYRQGMGIDVLAGVEAIISHLVVKEFQTPCAHAPAMLPLPLTRTLSPKSAAEEIGYTFLPCVLVGLSKAPQYKVNS
QSSESDCIYASDVDSVVVPLDACGGDATLAFARSKGNKPLIVAVEENETVLDSTPDKLGIEVIKVSNYWEAIGIIAAHKAGINPHSLRRDRISNIHHRKN
SSVRQTNGFTASIPHS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10005791
[exp]
0 1
AT4G26370 antitermination NusB domain-co... Lus10013400
[exp]
1.4 0.9657
AT3G56650 Mog1/PsbP/DUF1795-like photosy... Lus10029785
[exp]
2.0 0.9606
AT4G16390 SVR7 suppressor of variegation 7, p... Lus10039071
[exp]
6.0 0.9463
AT1G74850 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid... Lus10033127
[exp]
6.3 0.9376
AT1G09900 Pentatricopeptide repeat (PPR-... Lus10015112
[exp]
6.5 0.9354
AT2G32230 PRORP1 proteinaceous RNase P 1 (.1) Lus10038809
[exp]
6.9 0.9287
AT3G01480 ATCYP38, CYP38 ARABIDOPSIS CYCLOPHILIN 38, cy... Lus10032151
[exp]
7.0 0.9354
AT3G51820 PDE325, ATG4, G... PIGMENT DEFECTIVE 325, UbiA pr... Lus10027815
[exp]
7.3 0.9334
AT3G25920 RPL15 ribosomal protein L15 (.1) Lus10031417
[exp]
8.0 0.9391
AT1G09900 Pentatricopeptide repeat (PPR-... Lus10015108
[exp]
8.8 0.9236

Lus10005791 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.